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WormBase Tree Display for Gene: WBGene00000024

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Name Class

WBGene00000024SMapS_parentSequenceAC3
IdentityVersion1
NameCGC_nameabu-1Person_evidenceWBPerson530
Sequence_nameAC3.3
Molecular_nameAC3.3
AC3.3.1
CE05133
Other_namepqn-1
CELE_AC3.3Accession_evidenceNDBBX284605
Public_nameabu-1
DB_infoDatabaseAceViewgene5K858
WormQTLgeneWBGene00000024
WormFluxgeneWBGene00000024
NDBlocus_tagCELE_AC3.3
PanthergeneCAEEL|WormBase=WBGene00000024|UniProtKB=Q17400
familyPTHR31895
NCBIgene181800
RefSeqproteinNM_073266.4
TREEFAMTREEFAM_IDTF315535
TrEMBLUniProtAccQ17400
UniProt_GCRPUniProtAccQ17400
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:19WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classabu
Allele (12)
RNASeq_FPKM (74)
GO_annotation00057944
00057945
00057946
00057947
Ortholog (26)
Paralog (30)
Structured_descriptionConcise_descriptionabu-1 encodes a transmembrane protein with a predicted signal sequence, a glutamine/asparagine-rich domain and multiple cysteine-rich repeats (DUF139); abu-1 expression is induced by blockage of the endoplasmic reticulum unfolded protein response, and ABU-1 may help protect the organism from damage by improperly folded nascent protein; when expressed in COS1 cells, ABU-1 localizes to the endoplasmic reticulum membrane.Paper_evidenceWBPaper00005432
Curator_confirmedWBPerson1843
WBPerson567
Date_last_updated25 Oct 2013 00:00:00
Automated_descriptionInvolved in endoplasmic reticulum unfolded protein response. Located in endoplasmic reticulum membrane. Expressed in pharynx.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSAC3.3
Corresponding_transcriptAC3.3.1
Other_sequenceEY468455.1
ACC21420_1
CJC05164_1
Associated_featureWBsf652988
WBsf1001106
WBsf1020303
WBsf234385
Experimental_infoRNAi_result (27)
Expr_patternExpr2205
Expr2206
Expr2207
Expr1015645
Expr1142803
Expr2009109
Expr2027345
Drives_constructWBCnstr00005153
WBCnstr00005158
WBCnstr00037789
Construct_productWBCnstr00037789
Microarray_results (22)
Expression_clusterWBPaper00005432:xbp-1(zc12)_upregulated
WBPaper00032003:ced-1(e1735)_upregulated
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00040560:hpl-2_L3_downregulated
WBPaper00041954:ethanol_upregulated
WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
WBPaper00043945:MeHg_downregulated
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
WBPaper00044857:BAR-1_downregulated
WBPaper00045316:prg-1_upregulated_L2
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045774:clk-1_upregulated
WBPaper00046012:tdp-1(ok803)_downregulated
WBPaper00046024:sleep_upregulated_oscillating
WBPaper00046805:csr-1(RNAi)_downregulated_Set1
WBPaper00046805:P-granule-RNAi_downregulated_Set1
WBPaper00048611:MnCl2_downregulated
WBPaper00048988:neuron_expressed
WBPaper00049334:CE_intestine_enriched
WBPaper00049498:npr-1(ur89)_regulated_3
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
WBPaper00050080:rbr-2(tm3141)_downregulated
WBPaper00050109:rBmTX14_upregulated
WBPaper00050370:dpy-21(e428)_L3_downregulated
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00050990:body-muscle_expressed
WBPaper00050990:pharynx_expressed
WBPaper00051404:alg-1(gk214)_upregulated
WBPaper00051404:alg-2(ok304)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053295:lin-22(ot269)_downregulated
WBPaper00053402:cco-1(RNAi)_downregulated
WBPaper00053771:down_by_skn-1(RNAi)_at_dpy-7(e88)
WBPaper00053888:drh-3(rrr2)_upregulated
WBPaper00054493:hpl-2(tm1489)_upregulated
WBPaper00055013:hmg-3(bar24)_downregulated
WBPaper00055013:hmg-4(RNAi)_downregulated
WBPaper00055226:adr-1(tm668)_upregulated
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055386:daf-2(e1370)_upregulated
WBPaper00055386:eat-2(ad465)_upregulated
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00055944:C.butyricum_vs_OP50_downregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056167:Cry5B_downregulated
WBPaper00056169:rrf-3(pk1426)_downregulated_adult
WBPaper00056290:hsp-6(mg585)_downregulated
WBPaper00056290:mdt-15(mg584)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056617:adr-1_downregulated_L4_transcript
WBPaper00056617:adr-1_upregulated_embryo_transcript
WBPaper00056617:adr-2_upregulated_embryo_transcript
WBPaper00058725:sftb-1(cer6)_downregulated
WBPaper00059117:B.subtilis_upregulated
WBPaper00059191:hsp-16.2p-LIN-29_upregulated
WBPaper00059421:daf-1(m40)_upregulated
WBPaper00059421:daf-3(mgDf90)_downregulated
WBPaper00059426:Ag-nanoparticles_upregulated
WBPaper00059426:SiO2-nanoparticles_upregulated
WBPaper00059728:5ug_cholesterol_upregulated
WBPaper00059728:20ug_cholesterol_upregulated
WBPaper00059739:hira-1(gk835598)_downregulated_L1
WBPaper00059739:hira-1(gk835598)_upregulated_adult
WBPaper00060273:isp-1(qm150)_upregulated
WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
WBPaper00060434:pH4.33_vs_pH6.33_uprgulated
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060871:M.humicola-extract_1h_regulated
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00061007:HB101_upregulated
WBPaper00061007:HB115_upregulated
WBPaper00061007:M.braciatum_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061007:X.citri_upregulated
WBPaper00061040:eat-2(ad1116)_downregulated
WBPaper00061424:Diet_MYb120_upregulated
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061527:pqn-54-abu-9
WBPaper00061753:csr-1(tor159)_upregulated_20C
WBPaper00062056:lin-15B(we23)_downregulated
WBPaper00062056:lin-37(n758)_downregulated
WBPaper00062156:jmjd-1.2(zr1010)_upregulated
WBPaper00062156:jmjd-5(zr1234)_upregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062440:crh-1(n3315)_upregulated
WBPaper00062440:crh-1(syb385)_upregulated
WBPaper00062456:doxycycline_upregulated_N2_transcript
WBPaper00062520:qui-1(db104)_downregulated
WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
WBPaper00064130:Beta-Amyloid_8h_downregulated_mRNA
WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064494:postdauer_downregulated_WholeAnimal
WBPaper00064532:pals-25(icb98)_upregulated
WBPaper00064661:lpd-3(ok2138)_upregulated
WBPaper00064716:paraquat_upregulated
WBPaper00064728:cpl-1(W32AY35A)_upregulated
WBPaper00064788:ketamine_upregulated
WBPaper00065029:cadmium_downregulated
WBPaper00065158:25C_vs_15C_downregulated_WholeAnimal
WBPaper00065258:anchor-cell_enriched
WBPaper00065560:E.coli-HB101_downregulated_F3
WBPaper00065746:eat-2(ad1113)_downregulated
WBPaper00065926:pgph-2(overepxreesion)_upregulated_glucose
WBPaper00065995:M.humicola-extract_upregulated_N2
WBPaper00066093:E.coli-purE_upregulated
WBPaper00066110:Cisplatin_upregulated_diploid
WBPaper00066110:Doxorubicin_upregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066232:ash-2(RNAi)_downregulated_WT
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
WBPaper00066232:hsf-1(RNAi)_upregulated_WT
cgc4489_group_3
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00028948:cep-1(gk138)+UV_downregulated
WBPaper00029437:dcr-1_downregulated
WBPaper00030839:Larval_A_Class
WBPaper00032165:differentially_expressed_with_age_medoid_2
WBPaper00032948:FedUp
WBPaper00033101:spr-5_regulated
WBPaper00035227:heat_shock_regulated
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00035873:osm-8_regulated
WBPaper00036130:mir-243_up_regulated
WBPaper00036286:Pattern_G
WBPaper00037113:CPF_16C_down-regulated
WBPaper00038172:aak-2overexpression_up_regulated
WBPaper00038172:crh-1null_up_regulated
WBPaper00038172:tax-6null_up_regulated
WBPaper00038304:octr-1_regulated
WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
WBPaper00040821:Au-NP_regulated
WBPaper00040858:eQTL_age_regulated_aging
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_aging
WBPaper00040858:eQTL_regulated_developing
WBPaper00040858:eQTL_regulated_juvenile
WBPaper00040858:eQTL_regulated_old
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00042331:a-SWCNTs_downregulated
WBPaper00045263:nuo-6(qm200)_downregulated
WBPaper00045960:L1-L4-lethargus_upregulated
WBPaper00045960:L4-lethargus_upregulated
WBPaper00046083:pmk-1(km25)_OP50_downregulated
WBPaper00046548:dafachronic-acid_downregulated
WBPaper00046853:AOBr_M.aeruginosa-batch-culture_downregulated
WBPaper00047070:xpa-1_UV_downregulated
WBPaper00048624:hlh-25(ok1710)_upregulated
WBPaper00048989:N2_rapamycin_upregulated
WBPaper00051387:Triclosan_upregulated
WBPaper00056330:mrps-5(RNAi)_upregulated
WBPaper00057098:SiO2-nanoparticles_downregulated
[cgc5767]:cluster_2
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(53_min)
[cgc5767]:expression_class_SE
[cgc5767]:expression_class_SE_pi(53_min)
[cgc6390]:Cluster_C
Interaction (79)
WBProcessWBbiopr:00000008
WBbiopr:00000046
WBbiopr:00000079
Map_infoMapVPosition2.5233Error0.001312
PositivePositive_cloneAC3Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00005432
WBPaper00006425
WBPaper00026601
WBPaper00031867
WBPaper00032003
WBPaper00037416
WBPaper00038304
WBPaper00045960
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene