WormBase Tree Display for Gene: WBGene00107390

WBGene00107390 SMap: S_parent: Sequence: PPA_ChrIII
  Identity: Version: 8
    Name: CGC_name: Ppa-nca-2 From_analysis: Inferred_from_orthology
      Sequence_name: PPA17836
      Molecular_name: PPA17836
        PPA17836.1
        PP60264
      Other_name: GENEPREDICTION_SNAP300000074539
        GENEPREDICTION_SNAP300000074540
        UMM-S2874-1.13 Person_evidence: WBPerson606
        Ppa-nca-1 Inferred_automatically: from gene merge
      Public_name: Ppa-nca-2
    Species: Pristionchus pacificus
    History: Version_change: 1 06 Aug 2008 09:05:05 WBPerson4055 Event: Imported: from NGASP
        2 17 Nov 2017 15:19:42 WBPerson4055 Name_change: CGC_name: Ppa-nca-1
        3 24 Nov 2017 09:46:50 WBPerson4055 Event: Acquires_merge: WBGene00107391
        4 20 Mar 2018 10:26:11 WBPerson4025 Name_change: CGC_name: Ppa-nca-2
                Other_name: Ppa-nca-1
        5 08 Feb 2019 15:42:28 WBPerson1983 Name_change: CGC_name: Removed
        6 08 May 2019 10:09:25 WBPerson1983 Name_change: CGC_name: Ppa-nca-2
        7 28 May 2021 19:05:20 WBPerson1983 Name_change: CGC_name: Removed
        8 28 Jul 2021 11:12:28 WBPerson1983 Name_change: CGC_name: Ppa-nca-2
      Acquires_merge: WBGene00107391
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nca
    RNASeq_FPKM: WBls:0000032 7.20328 From_analysis: RNASeq.pristionchus.WBls:0000032.control_mean
            RNASeq.pristionchus.WBls:0000032.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 0 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_median
            RNASeq.pristionchus.WBls:0000101.control_mean
            RNASeq.pristionchus.WBls:0000101.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
        2.40109 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_mean
    GO_annotation: 00181262
      00181263
      00181264
      00181265
      00181266
    Ortholog: WBGene00003558 Caenorhabditis elegans From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00006809 Caenorhabditis elegans From_analysis: Inparanoid_8
      WBGene00027947 Caenorhabditis briggsae From_analysis: Inparanoid_8
      WBGene00037668 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00061652 Caenorhabditis remanei From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00066082 Caenorhabditis remanei From_analysis: Inparanoid_8
      WBGene00080174 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
      WBGene00140494 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00154155 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00153792 Caenorhabditis brenneri From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00216830 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00008911 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00210648 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00213069 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00216125 Caenorhabditis japonica From_analysis: WormBase-Compara
      CBOVI.g6057 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g2186 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP21.g2187 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP21.g9777 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g1531 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g19840 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g5307 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g20300 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g1116 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g12031 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g11077 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g20586 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g22981 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g27547 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g1179 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00300.g8789 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-nca-2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g14381 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp11.Scaffold629.g14382 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00253.g8028 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_18915 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_009969 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g05040 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_30054110 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g7529 Caenorhabditis elegans From_analysis: WormBase-Compara
      chrIII_pilon.g7605 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00263078 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00290727 Trichuris muris From_analysis: WormBase-Compara
    Paralog: WBGene00091694 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00092845 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00116989 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00118298 Pristionchus pacificus From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable monoatomic cation channel activity. Predicted to be involved in monoatomic ion transport and transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans nca-2. In C. elegans, nca-2 is involved in positive regulation of GABAergic synaptic transmission; positive regulation of cholinergic synaptic transmission; and positive regulation of locomotion. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: PPA17836
    Corresponding_transcript: PPA17836.1
    Other_sequence: RS10662
      AS06149
      FG620964.1
      JI229652.1
      FG620961.1
      RSC03224_1
      FG620975.1
      JI172151.1
      FG620960.1
      ACC12872_1
      FC539987.1
      ASC08878_1
      Acan_isotig19040
      FG620959.1
      FC554199.1
      ASC28692_1
      Oden_isotig19182
      FC554534.1
      MC04588
      MCC04834_1
      Acan_isotig18690
      JI171484.1
      FG620966.1
      FC548949.1
      EY472372.1
      FE913820.1
  Experimental_info: Microarray_results: GPL14372_Probes_21202
      GPL14372_Probes_21203
      GPL14372_Probes_21204
      GPL14372_Probes_21205
      GPL14372_Probes_21206
      GPL14372_Probes_73259
      GPL14372_Probes_73260
      GPL14372_Probes_73261
      GPL14372_Probes_73262
      GPL14372_Probes_73263
    Expression_cluster: WBPaper00041207:PP_dauer_up
  Remark: [190208 pad] The CGC name Ppa-nca-2 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [210528 pad] The CGC name Ppa-nca-2 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene