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WormBase Tree Display for Gene: WBGene00027947

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Name Class

WBGene00027947SMapS_parentSequencecb25.fpc0110
IdentityVersion4
NameCGC_nameCbr-unc-77From_analysisInferred_from_orthology
Sequence_nameCBG05508
Molecular_nameCBG05508a
CBG05508a.1
CBP38433
CBG05508b
CBP40952
CBG05508c
CBP43606
CBG05508b.1
CBG05508c.1
Other_nameCBG_05508Accession_evidenceNDBHE601369
Cbr-nca-1From_analysisInferred_from_orthology
Public_nameCbr-unc-77
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:57WBPerson1971EventImportedInitial conversion from brigace
221 Apr 2008 17:10:51WBPerson2970Name_changeCGC_nameCbr-nca-1
324 Jul 2008 11:56:35WBPerson1847EventAcquires_mergeWBGene00027948
420 Mar 2018 10:26:11WBPerson4025Name_changeCGC_nameCbr-unc-77
Other_nameCbr-nca-1
Acquires_mergeWBGene00027948
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classunc
AlleleWBVar00110642
WBVar00110643
WBVar00110644
WBVar00023249
WBVar00110645
RNASeq_FPKMWBls:00000022.36597From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
2.4287From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
2.73415From_analysisRNASeq.briggsae.WBls:0000002.control_mean
3.40777From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
1.54603From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
2.39734From_analysisRNASeq.briggsae.WBls:0000002.control_median
2.43712From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.176217From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.265336From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.354454From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
0.337065From_analysisRNASeq.briggsae.WBls:0000003.control_mean
0.480523From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000041.57972From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
1.71779From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
1.85585From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
1.0572From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
1.61023From_analysisRNASeq.briggsae.WBls:0000004.control_mean
1.63075From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
1.92763From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.427177From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.4762From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
3.72231From_analysisRNASeq.briggsae.WBls:0000027.control_mean
9.26354From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
4.27517From_analysisRNASeq.briggsae.WBls:0000027.control_median
4.56026From_analysisRNASeq.briggsae.WBls:0000027.control_mean
7.07413From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000354.94911From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.420984From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
1.34502From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
2.28995From_analysisRNASeq.briggsae.WBls:0000038.control_mean
2.48274From_analysisRNASeq.briggsae.WBls:0000038.control_median
3.62046From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
3.77334From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000410.778547From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.864536From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.874743From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.884949From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
1.34322From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.84486From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
1.66215From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.74048From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.43936From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
2.63062From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.251056From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.371738From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.430182From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.460992From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.533055From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.534071From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.471831From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.497023From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.680074From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001011.4762From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.62515From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
1.56288From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.51568From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00131360
00131361
00131362
00131363
00131364
Ortholog (45)
ParalogWBGene00037668Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00025194Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00028228Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036666Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable monoatomic cation channel activity. Predicted to be involved in monoatomic ion transport and transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans unc-77. In C. elegans, unc-77 is involved in positive regulation of GABAergic synaptic transmission; positive regulation of cholinergic synaptic transmission; and positive regulation of locomotion.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG05508a
CBG05508b
CBG05508c
Corresponding_CDS_historyCBG05508:bp194
CBG05508:bp255
Corresponding_transcriptCBG05508a.1
CBG05508b.1
CBG05508c.1
Other_sequence (33)
Experimental_infoExpr_patternExpr1050144
Microarray_resultsGPL8303_CB6_WBGene00027947_A
GPL8303_CB6_WBGene00027948_A
GPL8303_CB6_WBGene00027948_B
GPL14143_CBG05508_5341-5400_0.891_12_C
GPL14143_CBG05508_5552-5611_0.948_1_B
GPL14143_CBG05508_5641-5700_0.930_2_A
MethodGene