WormBase Tree Display for Variation: WBVar00110645

WBVar00110645 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00110645
    Other_name: cbs46166
      cb46166 Paper_evidence: WBPaper00055507
    HGVSg: chrIV:g.6699592A>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0110
    Flanking_sequences: caaatttttatatgtatgcacatat tcctttcacaatgaacagatttcta
    Mapping_target: cb25.fpc0110
    Type_of_mutation: Substitution: T G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 524 163 114 100 90 9
        GTAC AfaI, Csp6I, RsaI 708 257 35
        CATATG FauNDI, NdeI 1000
        AATT Sse9I, TasI, Tsp509I, TspEI 231 163 158 114 100 86 78 38 12 11 9
        WGTACW TatI 745 255
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 375 163 149 114 100 90 9
        GTAC AfaI, Csp6I, RsaI 708 292
        CATATG FauNDI, NdeI 504 496
        AATT Sse9I, TasI, Tsp509I, TspEI 163 158 149 114 100 86 82 78 38 12 11 9
        WGTACW TatI 1000
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00027947
    Transcript: CBG05508a.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05508a.1:c.*120T>G
        cDNA_position: 7979
        Exon_number: 29/29
      CBG05508b.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05508b.1:c.*120T>G
        cDNA_position: 5622
        Exon_number: 27/27
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP