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WormBase Tree Display for Gene: WBGene00036666

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Name Class

WBGene00036666SMapS_parentSequencecb25.fpc4044d
IdentityVersion2
NameCGC_nameCbr-cca-1From_analysisInferred_from_orthology
Sequence_nameCBG16834
Molecular_nameCBG16834
CBG16834.1
CBP43117
Other_nameCBG_16834Accession_evidenceNDBHE601001
Public_nameCbr-cca-1
DB_infoDatabaseNDBlocus_tagCBG_16834
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:06WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-cca-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcca
AlleleWBVar00124339
WBVar00015449
WBVar00124340
WBVar00015439
WBVar00015444
RNASeq_FPKMWBls:00000022.47025From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
3.83325From_analysisRNASeq.briggsae.WBls:0000002.control_mean
4.06871From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
4.96079From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
1.4432From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
3.23574From_analysisRNASeq.briggsae.WBls:0000002.control_mean
3.26948From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030.399868From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.56576From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.731652From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0.616679From_analysisRNASeq.briggsae.WBls:0000003.control_mean
0.718518From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000042.76237From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
3.15257From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
3.54277From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
2.48725From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
2.70994From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
3.01912From_analysisRNASeq.briggsae.WBls:0000004.control_mean
3.59325From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.36017From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.15141From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
2.93453From_analysisRNASeq.briggsae.WBls:0000027.control_mean
7.29201From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
4.22171From_analysisRNASeq.briggsae.WBls:0000027.control_median
4.41399From_analysisRNASeq.briggsae.WBls:0000027.control_mean
8.85239From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000358.92879From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.975802From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
4.14213From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
5.37513From_analysisRNASeq.briggsae.WBls:0000038.control_mean
5.68808From_analysisRNASeq.briggsae.WBls:0000038.control_median
7.23402From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
9.14858From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000411.47568From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
1.49981From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
1.66948From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.83915From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
2.38105From_analysisRNASeq.briggsae.WBls:0000041.control_mean
4.70955From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2.55838From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.88766From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.27761From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
4.52414From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.545119From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.553601From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.581976From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.723638From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
1.08752From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.638619From_analysisRNASeq.briggsae.WBls:0000063.control_median
1.06309From_analysisRNASeq.briggsae.WBls:0000063.control_mean
3.46869From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001012.47025From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.81629From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
2.73616From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.7302From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00140096
00140097
00140098
00140099
00140100
00140101
00140102
00140103
00140104
Ortholog (32)
ParalogWBGene00025194Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027947Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00028228Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037668Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable voltage-gated calcium channel activity. Predicted to be involved in calcium ion transmembrane transport. Predicted to be located in plasma membrane. Predicted to be part of voltage-gated calcium channel complex. Is an ortholog of C. elegans cca-1. In C. elegans, cca-1 is involved in membrane depolarization; positive regulation of action potential; and regulation of pharyngeal pumping.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG16834
Corresponding_CDS_historyCBG16834:bp194
CBG16834:bp255
Corresponding_transcriptCBG16834.1
Other_sequence (30)
Experimental_infoExpr_patternExpr1059579
Microarray_resultsGPL8303_CB6_WBGene00036666_A
GPL8303_CB6_WBGene00036666_B
GPL14143_CBG16834_90-149_0.815_1_A
GPL14143_CBG16834_4896-4955_0.796_24_B
GPL14143_CBG16834_5173-5232_0.773_106_C
MethodGene