WormBase Tree Display for Gene: WBGene00015062
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WBGene00015062 | SMap | S_parent | Sequence | B0228 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | trx | ||||||
Allele (17) | |||||||
Strain | WBStrain00001990 | ||||||
WBStrain00023529 | |||||||
WBStrain00032031 | |||||||
WBStrain00040309 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00053793 | ||||||
00053794 | |||||||
00053795 | |||||||
00053796 | |||||||
00053797 | |||||||
00053798 | |||||||
00053799 | |||||||
00053800 | |||||||
00121076 | |||||||
Ortholog (30) | |||||||
Paralog | WBGene00021548 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WormBase-Compara | |||||||
WBGene00007099 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00020917 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00021826 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00021933 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | trx-1 encodes a thioredoxin, a small redox protein that functions as a protein-disulfide reductase; loss of trx-1 activity via a deletion mutation and RNAi indicates that trx-1 is required for normal adult lifespan; in vitro, TRX-1 is capable of reducing protein disulfide bonds in the presence of a mammalian thioredoxin reductase; a TRX-1::GFP fusion protein is expressed in the ASJL/R amphid chemosensory neurons in males and hermaphrodites beginning just prior to hatching and continuing through larval and adult stages, including the alternative dauer larval stage; expression is also variably detected in posterior intestinal cells in larvae and adults, but not in dauers; subcellularly, the TRX-1::GFP fusion protein is detected in the nucleus, cytoplasm, cilia, dendrites, and axons. | Paper_evidence | WBPaper00026991 | |||
Curator_confirmed | WBPerson1843 | ||||||
WBPerson567 | |||||||
Date_last_updated | 11 Dec 2006 00:00:00 | ||||||
Automated_description | Enables protein-disulfide reductase activity. Involved in determination of adult lifespan. Located in several cellular components, including neuronal cell body; nucleus; and plasma membrane bounded cell projection. Expressed in ASJL; ASJR; head neurons; and in male. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | B0228.5a | |||||
B0228.5b | |||||||
Corresponding_transcript (2) | |||||||
Other_sequence | HG10738 | ||||||
CRC03474_1 | |||||||
CR05982 | |||||||
HG05543 | |||||||
HG10090 | |||||||
Dviv_isotig19334 | |||||||
Dviv_isotig19335 | |||||||
Associated_feature | WBsf650265 | ||||||
WBsf977973 | |||||||
WBsf977975 | |||||||
WBsf977977 | |||||||
WBsf977978 | |||||||
WBsf988550 | |||||||
WBsf1012594 | |||||||
WBsf223386 | |||||||
WBsf223387 | |||||||
Experimental_info | RNAi_result | WBRNAi00009608 | Inferred_automatically | RNAi_primary | |||
WBRNAi00065061 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00108374 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00065059 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00065060 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00028012 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00038765 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern (14) | |||||||
Drives_construct (36) | |||||||
Construct_product (21) | |||||||
Antibody | WBAntibody00001036 | ||||||
WBAntibody00001044 | |||||||
WBAntibody00001045 | |||||||
WBAntibody00001046 | |||||||
Microarray_results (25) | |||||||
Expression_cluster (66) | |||||||
Interaction (61) | |||||||
WBProcess | WBbiopr:00000001 | ||||||
Map_info | Map | II | Position | 0.560059 | Error | 0.000537 | |
Positive | Positive_clone | B0228 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference (35) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |