WormBase Tree Display for Gene: WBGene00007307
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WBGene00007307 | SMap | S_parent | Sequence | C04G2 | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | spch | |||||
Allele (17) | ||||||
Strain | WBStrain00032891 | |||||
WBStrain00037156 | ||||||
RNASeq_FPKM (74) | ||||||
GO_annotation | 00058727 | |||||
00058728 | ||||||
00058729 | ||||||
Ortholog (3) | ||||||
Paralog | WBGene00015689 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||
WBGene00020840 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
Structured_description | Concise_description | spch-1 encodes one of three C. elegans small, highly basic proteins that have similarity to mouse testis-specific histone H1, the human nucleotide binding and splicing-associated protein SON, and the mollusk protamine-like SNBPs (sperm nuclear basic proteins); spch-1(RNAi) has been reported to result in low penetrance male meiosis defects; SPCH-1 associates specifically with spermatogenic meiotic and mature sperm chromatin. | Paper_evidence | WBPaper00028451 | ||
Curator_confirmed | WBPerson1843 | |||||
Date_last_updated | 12 Nov 2014 00:00:00 | |||||
Automated_description | Involved in male meiotic nuclear division. Part of chromatin. Expressed in sperm. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | C04G2.8 | ||||
Corresponding_transcript | C04G2.8.1 | |||||
Associated_feature | WBsf997556 | |||||
WBsf997557 | ||||||
WBsf230669 | ||||||
Experimental_info | RNAi_result | WBRNAi00010151 | Inferred_automatically | RNAi_primary | ||
WBRNAi00022660 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00039663 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00028460 | Inferred_automatically | RNAi_primary | ||||
Expr_pattern | Expr4212 | |||||
Expr1011914 | ||||||
Expr1143757 | ||||||
Expr2016021 | ||||||
Expr2034256 | ||||||
Drives_construct | WBCnstr00033841 | |||||
Construct_product | WBCnstr00033841 | |||||
Antibody | WBAntibody00001149 | |||||
WBAntibody00001150 | ||||||
WBAntibody00001151 | ||||||
WBAntibody00001152 | ||||||
Microarray_results (17) | ||||||
Expression_cluster (230) | ||||||
Interaction (216) | ||||||
Map_info | Map | IV | Position | 4.52976 | ||
Positive | Positive_clone | C04G2 | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Pseudo_map_position | ||||||
Reference | WBPaper00028451 | |||||
WBPaper00035324 | ||||||
WBPaper00038491 | ||||||
WBPaper00047279 | ||||||
WBPaper00055090 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |