WormBase Tree Display for Gene: WBGene00006050
expand all nodes | collapse all nodes | view schema
WBGene00006050 | SMap | S_parent | Sequence | K07F5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | ssq-1 | Person_evidence | WBPerson680 | |||||
Sequence_name | K07F5.11 | ||||||||
Molecular_name (3) | |||||||||
Other_name | CELE_K07F5.11 | Accession_evidence | NDB | BX284604 | |||||
Public_name | ssq-1 | ||||||||
DB_info | Database | AceView | gene | 4K617 | |||||
WormQTL | gene | WBGene00006050 | |||||||
WormFlux | gene | WBGene00006050 | |||||||
NDB | locus_tag | CELE_K07F5.11 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00006050|UniProtKB=Q21294 | |||||||
family | PTHR31192 | ||||||||
NCBI | gene | 177835 | |||||||
RefSeq | protein | NM_069367.5 | |||||||
TrEMBL | UniProtAcc | Q21294 | |||||||
UniProt_GCRP | UniProtAcc | Q21294 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:39 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | ssq | ||||||||
Allele (31) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (35) | |||||||||
Paralog | WBGene00006052 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00006053 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00006051 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | ssq-1 encodes a member of the sperm-specific, class Q family of proteins; about 5% of ssq-1 transcripts are RNA edited to change A to G resulting in a change to residue 127 from an Gto a G. | Paper_evidence | WBPaper00045975 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
WBPerson4025 | |||||||||
Date_last_updated | 28 Dec 2014 00:00:00 | ||||||||
Automated_description | Enriched in several structures, including amphid sheath cell; distal tip cell; germ line; neurons; and sperm based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and age-1 based on microarray and RNA-seq studies. Is affected by twenty-six chemicals including Ethanol; methylmercury hydroxide; and nicotinic acid based on RNA-seq; microarray; and proteomic studies. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info (4) | |||||||||
Experimental_info | RNAi_result | WBRNAi00022578 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00050182 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00113754 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00016745 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00007440 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00113750 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00034081 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1018562 | ||||||||
Expr1032533 | |||||||||
Expr1153876 | |||||||||
Expr2016940 | |||||||||
Expr2035088 | |||||||||
Drives_construct | WBCnstr00034574 | ||||||||
Construct_product | WBCnstr00034574 | ||||||||
Microarray_results (17) | |||||||||
Expression_cluster (254) | |||||||||
Interaction (114) | |||||||||
Map_info | Map | IV | Position | 4.43434 | Error | 0.000397 | |||
Positive | Positive_clone | K07F5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00025088 | ||||||||
WBPaper00038491 | |||||||||
WBPaper00064850 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |