WormBase Tree Display for Gene: WBGene00006050
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WBGene00006050 | SMap | S_parent | Sequence | K07F5 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | ssq | ||||||
Allele (31) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog (35) | |||||||
Paralog | WBGene00006052 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
WBGene00006053 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00006051 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
Structured_description | Concise_description | ssq-1 encodes a member of the sperm-specific, class Q family of proteins; about 5% of ssq-1 transcripts are RNA edited to change A to G resulting in a change to residue 127 from an Gto a G. | Paper_evidence | WBPaper00045975 | |||
Curator_confirmed | WBPerson1843 | ||||||
WBPerson4025 | |||||||
Date_last_updated | 28 Dec 2014 00:00:00 | ||||||
Automated_description | Enriched in several structures, including amphid sheath cell; distal tip cell; germ line; neurons; and sperm based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and age-1 based on microarray and RNA-seq studies. Is affected by twenty-six chemicals including Ethanol; methylmercury hydroxide; and nicotinic acid based on RNA-seq; microarray; and proteomic studies. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info (4) | |||||||
Experimental_info | RNAi_result | WBRNAi00022578 | Inferred_automatically | RNAi_primary | |||
WBRNAi00050182 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00113754 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00016745 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00007440 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00113750 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00034081 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1018562 | ||||||
Expr1032533 | |||||||
Expr1153876 | |||||||
Expr2016940 | |||||||
Expr2035088 | |||||||
Drives_construct | WBCnstr00034574 | ||||||
Construct_product | WBCnstr00034574 | ||||||
Microarray_results (17) | |||||||
Expression_cluster (254) | |||||||
Interaction (114) | |||||||
Map_info | Map | IV | Position | 4.43434 | Error | 0.000397 | |
Positive | Positive_clone | K07F5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00025088 | ||||||
WBPaper00038491 | |||||||
WBPaper00064850 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |