WormBase Tree Display for Gene: WBGene00003957
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WBGene00003957 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | pcp-2 | Person_evidence | WBPerson564 | |||||
Sequence_name | F23B2.12 | ||||||||
Molecular_name | F23B2.12 | ||||||||
F23B2.12.1 | |||||||||
CE09592 | |||||||||
Other_name | CELE_F23B2.12 | Accession_evidence | NDB | BX284604 | |||||
Public_name | pcp-2 | ||||||||
DB_info | Database | AceView | gene | 4J926 | |||||
WormQTL | gene | WBGene00003957 | |||||||
WormFlux | gene | WBGene00003957 | |||||||
NDB | locus_tag | CELE_F23B2.12 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003957|UniProtKB=G5EFJ8 | |||||||
family | PTHR11010 | ||||||||
NCBI | gene | 177741 | |||||||
RefSeq | protein | NM_069198.6 | |||||||
TREEFAM | TREEFAM_ID | TF314855 | |||||||
TrEMBL | UniProtAcc | G5EFJ8 | |||||||
UniProt_GCRP | UniProtAcc | G5EFJ8 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pcp | ||||||||
Allele (62) | |||||||||
In_cluster | conserved_RDE-1_cluster | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00018287 | ||||||||
00018288 | |||||||||
00018289 | |||||||||
00018290 | |||||||||
00018291 | |||||||||
00112069 | |||||||||
00112070 | |||||||||
Ortholog (57) | |||||||||
Paralog | WBGene00003956 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00016134 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00017592 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00022801 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00019682 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00018984 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00017594 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00003958 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00003959 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00044302 | Caenorhabditis elegans | From_analysis | Panther | ||||||
Structured_description | Concise_description | pcp-2 encodes a prolyl carboxypeptidase. | Curator_confirmed | WBPerson1843 | |||||
Date_last_updated | 14 Oct 2013 00:00:00 | ||||||||
Automated_description | Predicted to enable dipeptidyl-peptidase activity. Predicted to be involved in proteolysis. Located in membrane raft. Is an ortholog of human PRSS16 (serine protease 16). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F23B2.12 | |||||||
Corresponding_transcript | F23B2.12.1 | ||||||||
Other_sequence (58) | |||||||||
Associated_feature | WBsf652040 | ||||||||
WBsf718154 | |||||||||
WBsf230520 | |||||||||
WBsf230521 | |||||||||
WBsf230522 | |||||||||
Experimental_info | RNAi_result | WBRNAi00115958 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00045388 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00089053 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00013802 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00031310 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1016805 | ||||||||
Expr1149311 | |||||||||
Expr2014784 | |||||||||
Expr2033018 | |||||||||
Drives_construct | WBCnstr00035775 | ||||||||
Construct_product | WBCnstr00035775 | ||||||||
Microarray_results (17) | |||||||||
Expression_cluster (297) | |||||||||
Interaction (47) | |||||||||
Map_info | Map | IV | Position | 4.10071 | Error | 0.003745 | |||
Positive | Positive_clone | F23B2 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00031095 | ||||||||
WBPaper00037777 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00065759 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |