WormBase Tree Display for Gene: WBGene00003959
expand all nodes | collapse all nodes | view schema
| WBGene00003959 | SMap | S_parent | Sequence | Y116F11B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | pcp-4 | Person_evidence | WBPerson564 | |||||
| Sequence_name | Y116F11B.3 | ||||||||
| Molecular_name | Y116F11B.3 | ||||||||
| Y116F11B.3.1 | |||||||||
| CE26048 | |||||||||
| Y116F11B.3.2 | |||||||||
| Other_name | CELE_Y116F11B.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | pcp-4 | ||||||||
| DB_info | Database | AceView | gene | 5U292 | |||||
| WormQTL | gene | WBGene00003959 | |||||||
| WormFlux | gene | WBGene00003959 | |||||||
| NDB | locus_tag | CELE_Y116F11B.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003959|UniProtKB=Q9GRV9 | |||||||
| family | PTHR11010 | ||||||||
| NCBI | gene | 180301 | |||||||
| RefSeq | protein | NM_075440.8 | |||||||
| TREEFAM | TREEFAM_ID | TF314855 | |||||||
| TrEMBL | UniProtAcc | Q9GRV9 | |||||||
| UniProt_GCRP | UniProtAcc | Q9GRV9 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pcp | ||||||||
| Allele (235) | |||||||||
| In_cluster | conserved_RDE-1_cluster | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00092244 | ||||||||
| 00092245 | |||||||||
| 00092246 | |||||||||
| 00092247 | |||||||||
| 00092248 | |||||||||
| 00112073 | |||||||||
| 00112074 | |||||||||
| Ortholog (62) | |||||||||
| Paralog | WBGene00003956 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00003957 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003958 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00016134 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00017592 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022801 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00019682 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00018984 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00017594 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00044302 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Automated_description | Predicted to enable dipeptidyl-peptidase activity. Predicted to be involved in proteolysis. Located in membrane raft. Is an ortholog of human PRSS16 (serine protease 16). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y116F11B.3 | |||||||
| Corresponding_transcript | Y116F11B.3.1 | ||||||||
| Y116F11B.3.2 | |||||||||
| Other_sequence | ACC24777_1 | ||||||||
| MA02984 | |||||||||
| HCC04047 | |||||||||
| EX540882.1 | |||||||||
| EX563930.1 | |||||||||
| HC01381 | |||||||||
| Associated_feature | WBsf1003362 | ||||||||
| WBsf1021820 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00055482 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1013824 | ||||||||
| Expr1158989 | |||||||||
| Expr2014786 | |||||||||
| Expr2033020 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (228) | |||||||||
| Interaction | WBInteraction000552878 | ||||||||
| Map_info | Map | V | Position | 23.5421 | Error | 0.004665 | |||
| Positive | Positive_clone | Y116F11B | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029226 | ||||||||
| WBPaper00037777 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
