WormBase Tree Display for Gene: WBGene00001796
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WBGene00001796 | SMap | S_parent | Sequence | F54D1 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | gtl-2 | Person_evidence | WBPerson51 | |||||
Sequence_name | F54D1.5 | ||||||||
Molecular_name | F54D1.5 | ||||||||
F54D1.5.1 | |||||||||
CE40563 | |||||||||
Other_name | CELE_F54D1.5 | Accession_evidence | NDB | BX284604 | |||||
Public_name | gtl-2 | ||||||||
DB_info | Database | AceView | gene | 4M45 | |||||
WormQTL | gene | WBGene00001796 | |||||||
WormFlux | gene | WBGene00001796 | |||||||
NDB | locus_tag | CELE_F54D1.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00001796|UniProtKB=Q20766 | |||||||
family | PTHR13800 | ||||||||
NCBI | gene | 178036 | |||||||
RefSeq | protein | NM_069717.7 | |||||||
TrEMBL | UniProtAcc | Q20766 | |||||||
UniProt_GCRP | UniProtAcc | Q20766 | |||||||
OMIM | gene | 603576 | |||||||
605692 | |||||||||
608961 | |||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | gtl | ||||||||
Allele (94) | |||||||||
Strain | WBStrain00024196 | ||||||||
WBStrain00005419 | |||||||||
WBStrain00049842 | |||||||||
WBStrain00049843 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00069079 | ||||||||
00069080 | |||||||||
00069081 | |||||||||
00069082 | |||||||||
00069083 | |||||||||
00109391 | |||||||||
00109392 | |||||||||
00109393 | |||||||||
00109394 | |||||||||
Ortholog (48) | |||||||||
Paralog | WBGene00001651 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00001795 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00000425 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00004149 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00008731 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00020972 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00021404 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00021408 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | gtl-2 encodes a predicted receptor-activated calcium channel and represents a family of calcium channels, the other two family members being gtl-1 and gon-2. | Paper_evidence | WBPaper00011683 | |||||
WBPaper00023556 | |||||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable monoatomic cation channel activity. Predicted to be involved in monoatomic cation transmembrane transport. Located in basal plasma membrane. Expressed in excretory canal; excretory cell; hypodermis; pharyngeal muscle cell; and pharynx. Used to study MASA syndrome. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis-parkinsonism/dementia complex 1; cataract; and congenital stationary night blindness 1C. Is an ortholog of human TRPM1 (transient receptor potential cation channel subfamily M member 1); TRPM3 (transient receptor potential cation channel subfamily M member 3); and TRPM7 (transient receptor potential cation channel subfamily M member 7). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Experimental_model | DOID:0060246 | |||||||
Potential_model | DOID:0110867 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7146) | |||||
DOID:0050534 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7146) | ||||||
DOID:0111246 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17994) | ||||||
DOID:83 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17992) | ||||||
Models_disease_asserted | WBDOannot00000053 | ||||||||
Molecular_info | Corresponding_CDS | F54D1.5 | |||||||
Corresponding_CDS_history | F54D1.5:wp57 | ||||||||
F54D1.5:wp167 | |||||||||
Corresponding_transcript | F54D1.5.1 | ||||||||
Other_sequence (12) | |||||||||
Associated_feature | WBsf718194 | ||||||||
WBsf997800 | |||||||||
WBsf997801 | |||||||||
WBsf1018191 | |||||||||
WBsf021262 | |||||||||
WBsf229125 | |||||||||
Experimental_info | RNAi_result | WBRNAi00109632 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00015597 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00109535 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00109341 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00048282 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00109244 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00109438 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00001304 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr3714 | ||||||||
Expr8231 | |||||||||
Expr9011 | |||||||||
Expr9299 | |||||||||
Expr1027597 | |||||||||
Expr1152084 | |||||||||
Expr2012343 | |||||||||
Expr2030580 | |||||||||
Drives_construct | WBCnstr00007205 | ||||||||
WBCnstr00011623 | |||||||||
WBCnstr00013198 | |||||||||
WBCnstr00013672 | |||||||||
WBCnstr00013883 | |||||||||
WBCnstr00036677 | |||||||||
WBCnstr00042689 | |||||||||
Construct_product | WBCnstr00011623 | ||||||||
WBCnstr00013198 | |||||||||
WBCnstr00013672 | |||||||||
WBCnstr00013883 | |||||||||
WBCnstr00036677 | |||||||||
WBCnstr00042689 | |||||||||
WBCnstr00042690 | |||||||||
Microarray_results (19) | |||||||||
Expression_cluster (120) | |||||||||
Interaction (21) | |||||||||
Map_info | Map | IV | Position | 4.94064 | Error | 0.001769 | |||
Positive | Positive_clone | F54D1 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4386 | |||||||
Pseudo_map_position | |||||||||
Reference (24) | |||||||||
Remark | Sequence connection from Kwan CSM, Ragnauth CD and Baylis HA [021008 ck1] | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |