WormBase Tree Display for Gene: WBGene00001990

WBGene00001990 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: K07A12
  Identity: Version: 1
    Name: CGC_name: hot-5 Person_evidence: WBPerson42
      Sequence_name: K07A12.6
      Molecular_name: K07A12.6
        K07A12.6.1
        CE11874
      Other_name: CELE_K07A12.6 Accession_evidence: NDB BX284601
      Public_name: hot-5
    DB_info: Database: AceView gene 1J260
        WormQTL gene WBGene00001990
        WormFlux gene WBGene00001990
        NDB locus_tag CELE_K07A12.6
        Panther gene CAEEL|WormBase=WBGene00001990|UniProtKB=G5ED79
          family PTHR34722
        NCBI gene 172671
        RefSeq protein NM_059948.6
        TREEFAM TREEFAM_ID TF315944
        TrEMBL UniProtAcc G5ED79
        UniProt_GCRP UniProtAcc G5ED79
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:26 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: hot
    Allele (41)
    RNASeq_FPKM (74)
    GO_annotation: 00013512
      00013513
      00013514
      00013515
    Ortholog: WBGene00060395 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00035249 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00192757 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00192045 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00268819 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g9217 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g7317 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g14517 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP31.g7583 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g5580 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g10762 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      Cang_2012_03_13_00043.g2324 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-hot-5 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp5_scaffold_00922.g16778 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_14701 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_001273 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g10696 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g7636 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10301520 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g1647 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00238489 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00274023 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00260236 Strongyloides ratti From_analysis: WormBase-Compara
    Paralog: WBGene00001986 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00001987 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00001988 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00001989 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00003849 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00020489 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00044484 Caenorhabditis elegans From_analysis: TreeFam
            Panther
    Structured_description: Concise_description: hot-5 encodes a predicted membrane-associated protein that is a member of the Ly-6 superfamily of glycosylphosphatidylinositol (GPI)-linked signaling proteins and is homologous to ODR-2, a neuronally expressed protein required for olfaction; as loss of hot-5 activity via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of HOT-5 in C. elegans development and/or behavior is not yet known. Paper_evidence: WBPaper00004498
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be involved in olfactory behavior and response to odorant. Predicted to be located in axon and neuronal cell body. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: K07A12.6
    Corresponding_transcript: K07A12.6.1
    Other_sequence: AF324057
      JI176669.1
    Associated_feature: WBsf649406
      WBsf664589
      WBsf664590
  Experimental_info: RNAi_result (3)
    Expr_pattern: Expr1020399
      Expr1153802
      Expr2012543
      Expr2030782
    Drives_construct: WBCnstr00036536
    Construct_product: WBCnstr00036536
    Microarray_results (18)
    Expression_cluster (153)
    Interaction (16)
  Map_info: Map: I Position: 3.01746 Error: 8.8e-05
    Positive: Positive_clone: K07A12 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00004498
  Remark: Sequence connection from [Chou JH, Bargmann CI, Sengupta P]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene