WormBase Tree Display for Gene: WBGene00000139

WBGene00000139 Evidence: Person_evidence: WBPerson508
  SMap: S_parent: Sequence: F25C8
  Identity: Version: 1
    Name: CGC_name: amx-3 Person_evidence: WBPerson508
      Sequence_name: F25C8.2
      Molecular_name: F25C8.2a
        F25C8.2a.1
        CE52859
        F25C8.2b
        CE45241
        F25C8.2b.1
      Other_name: CELE_F25C8.2 Accession_evidence: NDB BX284605
      Public_name: amx-3
    DB_info: Database: AceView gene 5V368
        WormQTL gene WBGene00000139
        WormFlux gene WBGene00000139
        NDB locus_tag CELE_F25C8.2
        Panther gene CAEEL|WormBase=WBGene00000139|UniProtKB=E0AHD3
          family PTHR10742
        NCBI gene 184919
        RefSeq protein NM_001368491.3
            NM_001270035.3
        TREEFAM TREEFAM_ID TF318348
        TrEMBL UniProtAcc E0AHD4
            E0AHD3
        UniProt_GCRP UniProtAcc E0AHD3
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:20 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: amx
    Allele (98)
    Strain: WBStrain00032229
    RNASeq_FPKM (74)
    GO_annotation: 00008019
      00106855
    Ortholog: WBGene00063571 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00027980 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            Inparanoid_8
            WormBase-Compara
      WBGene00126935 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00139388 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00156150 Caenorhabditis brenneri From_analysis: Inparanoid_8
      CBOVI.g2230 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g407 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g18717 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g7276 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g1190 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g2250 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g9937 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g7114 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g20771 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g1933 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00180.g6348 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00234.g7546 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_V.g21923 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g21782 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_03484.g30345 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_21575 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_021975 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g00295 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g03287 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_50426900 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g18190 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00210917 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00092026 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00100033 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00275015 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00267237 Strongyloides ratti From_analysis: WormBase-Compara
      FB:FBgn0033584 Drosophila melanogaster From_analysis: OMA
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-5768 Danio rerio From_analysis: OrthoFinder
            OrthoInspector
            Panther
      ZFIN:ZDB-GENE-031201-3 Danio rerio From_analysis: OMA
            OrthoFinder
            OrthoInspector
      ZFIN:ZDB-GENE-090312-204 Danio rerio From_analysis: OrthoFinder
            OrthoInspector
            Panther
      ZFIN:ZDB-GENE-081104-436 Danio rerio From_analysis: OMA
            OrthoFinder
            OrthoInspector
      HGNC:15862 Homo sapiens From_analysis: Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      HGNC:20837 Homo sapiens From_analysis: Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      MGI:1916983 Mus musculus From_analysis: OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:1561125 Rattus norvegicus From_analysis: OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:1306049 Rattus norvegicus From_analysis: OMA
            OrthoFinder
            OrthoInspector
            SonicParanoid
    Paralog: WBGene00016061 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00000137 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00000138 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00005010 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00011615 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00019154 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable polyamine oxidase activity. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma. Is an ortholog of human PAOX (polyamine oxidase) and SMOX (spermine oxidase). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:3908 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:20837)
  Molecular_info: Corresponding_CDS: F25C8.2a
      F25C8.2b
    Corresponding_CDS_history: F25C8.2:wp154
      F25C8.2:wp176
      F25C8.2:wp217
      F25C8.2a:wp268
    Corresponding_transcript: F25C8.2a.1
      F25C8.2b.1
    Other_sequence (13)
    Associated_feature: WBsf653637
      WBsf653638
      WBsf235241
      WBsf235242
      WBsf235243
  Experimental_info: RNAi_result (3)
    Expr_pattern: Expr1016133
      Expr1030072
      Expr1149399
      Expr2009331
      Expr2027567
    Microarray_results (19)
    Expression_cluster (137)
    Interaction: WBInteraction000169058
      WBInteraction000169059
      WBInteraction000169060
      WBInteraction000169061
      WBInteraction000169062
      WBInteraction000169393
      WBInteraction000169721
      WBInteraction000221487
      WBInteraction000335817
      WBInteraction000439307
  Map_info: Map: V Position: 25.6311 Error: 0.020715
    Positive: Positive_clone: F25C8 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00026287
    WBPaper00030371
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene