WormBase Tree Display for Gene: WBGene00006050

WBGene00006050 SMap: S_parent: Sequence: K07F5
  Identity: Version: 1
    Name: CGC_name: ssq-1 Person_evidence: WBPerson680
      Sequence_name: K07F5.11
      Molecular_name: K07F5.11
        K07F5.11.1
        CE06125
      Other_name: CELE_K07F5.11 Accession_evidence: NDB BX284604
      Public_name: ssq-1
    DB_info: Database: AceView gene 4K617
        WormQTL gene WBGene00006050
        WormFlux gene WBGene00006050
        NDB locus_tag CELE_K07F5.11
        Panther gene CAEEL|WormBase=WBGene00006050|UniProtKB=Q21294
          family PTHR31192
        NCBI gene 177835
        RefSeq protein NM_069367.5
        TrEMBL UniProtAcc Q21294
        UniProt_GCRP UniProtAcc Q21294
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:39 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ssq
    Allele (31)
    RNASeq_FPKM (74)
    Ortholog (35)
    Paralog: WBGene00006052 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00006053 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00006051 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Concise_description: ssq-1 encodes a member of the sperm-specific, class Q family of proteins; about 5% of ssq-1 transcripts are RNA edited to change A to G resulting in a change to residue 127 from an Gto a G. Paper_evidence: WBPaper00045975
          Curator_confirmed: WBPerson1843
            WBPerson4025
          Date_last_updated: 28 Dec 2014 00:00:00
      Automated_description: Enriched in several structures, including amphid sheath cell; distal tip cell; germ line; neurons; and sperm based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and age-1 based on microarray and RNA-seq studies. Is affected by twenty-six chemicals including Ethanol; methylmercury hydroxide; and nicotinic acid based on RNA-seq; microarray; and proteomic studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info (4)
  Experimental_info: RNAi_result: WBRNAi00022578 Inferred_automatically: RNAi_primary
      WBRNAi00050182 Inferred_automatically: RNAi_primary
      WBRNAi00113754 Inferred_automatically: RNAi_primary
      WBRNAi00016745 Inferred_automatically: RNAi_primary
      WBRNAi00007440 Inferred_automatically: RNAi_primary
      WBRNAi00113750 Inferred_automatically: RNAi_primary
      WBRNAi00034081 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1018562
      Expr1032533
      Expr1153876
      Expr2016940
      Expr2035088
    Drives_construct: WBCnstr00034574
    Construct_product: WBCnstr00034574
    Microarray_results (17)
    Expression_cluster (254)
    Interaction: WBInteraction000103577
      WBInteraction000105593
      WBInteraction000106373
      WBInteraction000112637
      WBInteraction000114817
      WBInteraction000126797
      WBInteraction000133714
      WBInteraction000136213
      WBInteraction000137221
      WBInteraction000139510
      WBInteraction000140638
      WBInteraction000140653
      WBInteraction000143081
      WBInteraction000144814
      WBInteraction000145373
      WBInteraction000146446
      WBInteraction000147975
      WBInteraction000148163
      WBInteraction000151405
      WBInteraction000152241
      WBInteraction000152887
      WBInteraction000157392
      WBInteraction000160097
      WBInteraction000160934
      WBInteraction000161260
      WBInteraction000161643
      WBInteraction000161959
      WBInteraction000163414
      WBInteraction000163540
      WBInteraction000165350
      WBInteraction000165419
      WBInteraction000168482
      WBInteraction000168672
      WBInteraction000171228
      WBInteraction000171519
      WBInteraction000171864
      WBInteraction000172484
      WBInteraction000175401
      WBInteraction000175824
      WBInteraction000177075
      WBInteraction000177134
      WBInteraction000177310
      WBInteraction000177400
      WBInteraction000177668
      WBInteraction000178039
      WBInteraction000180502
      WBInteraction000181724
      WBInteraction000189376
      WBInteraction000192851
      WBInteraction000195624
      WBInteraction000197678
      WBInteraction000198933
      WBInteraction000203981
      WBInteraction000205823
      WBInteraction000206541
      WBInteraction000206596
      WBInteraction000208613
      WBInteraction000209075
      WBInteraction000209945
      WBInteraction000210699
      WBInteraction000212144
      WBInteraction000213317
      WBInteraction000219661
      WBInteraction000219983
      WBInteraction000220498
      WBInteraction000227326
      WBInteraction000230321
      WBInteraction000233603
      WBInteraction000235097
      WBInteraction000236028
      WBInteraction000239106
      WBInteraction000244315
      WBInteraction000247253
      WBInteraction000248658
      WBInteraction000250168
      WBInteraction000251628
      WBInteraction000252462
      WBInteraction000253049
      WBInteraction000263663
      WBInteraction000270943
      WBInteraction000271005
      WBInteraction000272534
      WBInteraction000274628
      WBInteraction000275543
      WBInteraction000276909
      WBInteraction000279682
      WBInteraction000280607
      WBInteraction000282979
      WBInteraction000290974
      WBInteraction000298136
      WBInteraction000302765
      WBInteraction000308065
      WBInteraction000308682
      WBInteraction000321449
      WBInteraction000323859
      WBInteraction000329257
      WBInteraction000331459
      WBInteraction000338660
      WBInteraction000355631
      WBInteraction000357129
      WBInteraction000359020
      WBInteraction000370340
      WBInteraction000371836
      WBInteraction000374146
      WBInteraction000376049
      WBInteraction000377631
      WBInteraction000400864
      WBInteraction000426536
      WBInteraction000433719
      WBInteraction000451803
      WBInteraction000456240
      WBInteraction000458093
      WBInteraction000547239
      WBInteraction000548997
  Map_info: Map: IV Position: 4.43434 Error: 0.000397
    Positive: Positive_clone: K07F5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00025088
    WBPaper00038491
    WBPaper00064850
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene