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WormBase Tree Display for Gene: WBGene00009638

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Name Class

WBGene00009638SMapS_parentSequenceF42F12
IdentityVersion2
NameCGC_namenspc-14Person_evidenceWBPerson655
Sequence_nameF42F12.7
Molecular_nameF42F12.7
F42F12.7.1
CE31939
Other_nameCELE_F42F12.7Accession_evidenceNDBBX284606
Public_namenspc-14
DB_infoDatabaseAceViewgeneXM976
WormQTLgeneWBGene00009638
WormFluxgeneWBGene00009638
NDBlocus_tagCELE_F42F12.7
NCBIgene181395
RefSeqproteinNM_182449.8
TREEFAMTREEFAM_IDTF318876
TrEMBLUniProtAccG5EF55
UniProt_GCRPUniProtAccG5EF55
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
218 May 2005 14:07:22WBPerson2970Name_changeCGC_namenspc-14
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnspc
Allele (27)
RNASeq_FPKM (74)
Ortholog (259)
ParalogWBGene00008356Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00008357Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00008358Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00008359Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00008360Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00009634Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00009637Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00023477Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00044339Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00044357Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00023493Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00044337Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00044338Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00044340Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00015392Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00009640Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00009639Caenorhabditis elegansFrom_analysisInparanoid_8
WormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in ASER and excretory gland cell based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; RNA-seq; and tiling array studies. Is affected by fifteen chemicals including rotenone; mianserin; and D-glucose based on RNA-seq studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF42F12.7
Corresponding_CDS_historyF42F12.7:wp87
Corresponding_transcriptF42F12.7.1
Other_sequenceCR12238
CBC00222_4
CRC07389_1
Associated_featureWBsf238058
Experimental_infoRNAi_resultWBRNAi00047106Inferred_automaticallyRNAi_primary
Expr_patternExpr1150973
Expr2014465
Expr2032705
Drives_constructWBCnstr00032034
Construct_productWBCnstr00032034
Microarray_resultsSMD_F42F12.7
A_12_P107617
GPL8304_CE_WBGene00009638_A
GPL8673_F42F12_7P00063
GPL8673_F42F12_7P00094
GPL9450_F42F12.7
cea2.d.25296
Expression_cluster (163)
InteractionWBInteraction000118973
WBInteraction000146646
WBInteraction000183707
WBInteraction000196095
WBInteraction000214360
WBInteraction000217441
WBInteraction000222104
WBInteraction000231320
WBInteraction000235367
WBInteraction000241465
WBInteraction000255436
WBInteraction000255916
WBInteraction000258232
WBInteraction000258290
WBInteraction000258759
WBInteraction000261928
WBInteraction000264774
WBInteraction000266879
WBInteraction000274333
WBInteraction000276892
WBInteraction000284236
WBInteraction000286949
WBInteraction000288169
WBInteraction000300165
WBInteraction000305276
WBInteraction000305357
WBInteraction000309805
WBInteraction000313350
WBInteraction000316946
WBInteraction000330835
WBInteraction000331536
WBInteraction000332149
WBInteraction000338726
WBInteraction000339467
WBInteraction000339491
WBInteraction000343733
WBInteraction000345922
WBInteraction000350070
WBInteraction000356751
WBInteraction000364734
WBInteraction000375441
WBInteraction000380433
WBInteraction000385164
WBInteraction000387483
WBInteraction000398015
WBInteraction000403126
WBInteraction000404222
WBInteraction000404894
WBInteraction000428777
WBInteraction000431301
WBInteraction000439044
WBInteraction000439638
WBInteraction000451645
WBInteraction000456544
WBInteraction000460137
Map_infoMapXPosition7.03287
PositivePositive_cloneF42F12Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00064841
WBPaper00065331
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene