WormBase Tree Display for Gene: WBGene00003588
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WBGene00003588 | SMap | S_parent | Sequence | ZC155 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | nex-1 | |||||||
Sequence_name | ZC155.1 | ||||||||
Molecular_name | ZC155.1 | ||||||||
ZC155.1.1 | |||||||||
CE01431 | |||||||||
Other_name | CELE_ZC155.1 | Accession_evidence | NDB | BX284603 | |||||
Public_name | nex-1 | ||||||||
DB_info | Database | AceView | gene | 3G315 | |||||
WormQTL | gene | WBGene00003588 | |||||||
WormFlux | gene | WBGene00003588 | |||||||
NDB | locus_tag | CELE_ZC155.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003588|UniProtKB=G5EEA8 | |||||||
family | PTHR10502 | ||||||||
NCBI | gene | 175714 | |||||||
RefSeq | protein | NM_065708.10 | |||||||
TrEMBL | UniProtAcc | G5EEA8 | |||||||
UniProt_GCRP | UniProtAcc | G5EEA8 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nex | ||||||||
Allele (23) | |||||||||
Legacy_information | [C.elegansII] NMK. Encodes protein with 42% identity to bovine annexin IV. Antibody stains pharyngeal grinder, gland cells, spermathecal folds. [CGC] | ||||||||
Strain | WBStrain00035608 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00014865 | ||||||||
00014866 | |||||||||
00014867 | |||||||||
00014868 | |||||||||
00014869 | |||||||||
00014870 | |||||||||
00014871 | |||||||||
00014872 | |||||||||
00014873 | |||||||||
00014874 | |||||||||
00014875 | |||||||||
00014876 | |||||||||
00014877 | |||||||||
00014878 | |||||||||
00014879 | |||||||||
00014880 | |||||||||
00014881 | |||||||||
00105954 | |||||||||
00105955 | |||||||||
Ortholog (33) | |||||||||
Paralog | WBGene00003589 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00003590 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00003591 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | nex-1 encodes an annexin, a member of a family of calcium-dependent phospholipid binding proteins; NEX-1 is required for efficient engulfment of apoptotic cell corpses in the pharynx, and may also function in other membrane fusion events, such as exocytosis; NEX-1 in vitro can bind phosphatidylserine, phosphatidylinositol, heparin, heparan sulfate, and chondroitin sulfate; NEX-1 is expressed in the pharynx, hypodermal cells, the vulva, the uterus, the spermathecal valve, and yolk granules of maturing oocytes. | Paper_evidence (3) | ||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enables heparin binding activity and phospholipid binding activity. Involved in engulfment of apoptotic cell. Located in intracellular membrane-bounded organelle and plasma membrane. Expressed in hypodermis; pharynx; spermathecal-uterine junction; uterine toroidal epithelial cell; and vulva. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | ZC155.1 | |||||||
Corresponding_transcript | ZC155.1.1 | ||||||||
Other_sequence (118) | |||||||||
Associated_feature | WBsf654958 | ||||||||
WBsf717068 | |||||||||
WBsf717895 | |||||||||
WBsf992337 | |||||||||
WBsf1014858 | |||||||||
WBsf224881 | |||||||||
Experimental_info | RNAi_result | WBRNAi00107729 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00087553 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00067291 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00027665 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00021578 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00080498 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00005118 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00107730 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00058747 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00041886 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1209 | ||||||||
Expr1210 | |||||||||
Expr1560 | |||||||||
Expr8283 | |||||||||
Expr1022217 | |||||||||
Expr1031638 | |||||||||
Expr1162168 | |||||||||
Expr2013979 | |||||||||
Expr2032219 | |||||||||
Drives_construct | WBCnstr00010152 | ||||||||
WBCnstr00036022 | |||||||||
Construct_product | WBCnstr00036022 | ||||||||
Antibody | WBAntibody00000107 | ||||||||
WBAntibody00001198 | |||||||||
Microarray_results (24) | |||||||||
Expression_cluster (231) | |||||||||
Interaction (36) | |||||||||
WBProcess | WBbiopr:00000015 | ||||||||
Map_info | Map | III | Position | -1.97258 | Error | 0.014291 | |||
Positive | Positive_clone | ZC155 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4167 | |||||||
4513 | |||||||||
Pseudo_map_position | |||||||||
Reference (17) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |