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WormBase Tree Display for Gene: WBGene00020251

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Name Class

WBGene00020251SMapS_parentSequenceT05C1
IdentityVersion3
NameCGC_namecamt-1Person_evidenceWBPerson260
Sequence_nameT05C1.4
Molecular_nameT05C1.4a
T05C1.4a.1
CE33443
T05C1.4b
CE33444
T05C1.4c
CE32207
T05C1.4b.1
T05C1.4c.1
Other_nameCELE_T05C1.4Accession_evidenceNDBBX284602
Public_namecamt-1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
History (2)
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcamt
Allele (251)
StrainWBStrain00031462
RNASeq_FPKM (74)
GO_annotation (16)
Ortholog (39)
Structured_descriptionConcise_descriptionT05C1.4 encodes, by alternative splicing, two members of the CAMTAfamily of calmodulin-binding transcriptional activators that arerequired for embryonic development; CAMTA proteins are conserved inanimals and plants but absent from unicellular eukaryotes, and may thusrepresent a transcriptional activator specific to multicellularorganisms; the common organization of CAMTA proteins is to have twoN-terminal DNA-binding domains (CG-1 and TIG), followed by two ankyrinrepeats, and then two or more calmodulin-binding IQ repeats; the domainorganization of T05C1.4 somewhat resembles that of NF-AT, anon-canonical Wnt transcription factor (TF) in other organisms than C.elegans.Paper_evidenceWBPaper00004651
WBPaper00013032
Curator_confirmedWBPerson567
Date_last_updated11 Dec 2006 00:00:00
Automated_descriptionEnables chromatin binding activity. Involved in positive chemotaxis; positive regulation of transcription by RNA polymerase II; and response to oxygen levels. Located in nucleus. Part of chromatin. Human ortholog(s) of this gene implicated in nonprogressive cerebellar ataxia with mental retardation. Is an ortholog of human CAMTA2 (calmodulin binding transcription activator 2).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0050998Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:18806)
Molecular_infoCorresponding_CDST05C1.4a
T05C1.4b
T05C1.4c
Corresponding_transcriptT05C1.4a.1
T05C1.4b.1
T05C1.4c.1
Other_sequence (42)
Associated_feature (17)
Transcription_factorWBTranscriptionFactor000241
Experimental_infoRNAi_resultWBRNAi00001809Inferred_automaticallyRNAi_primary
WBRNAi00052485Inferred_automaticallyRNAi_primary
WBRNAi00018214Inferred_automaticallyRNAi_primary
WBRNAi00103506Inferred_automaticallyRNAi_primary
WBRNAi00035188Inferred_automaticallyRNAi_primary
WBRNAi00052484Inferred_automaticallyRNAi_primary
WBRNAi00018216Inferred_automaticallyRNAi_primary
Expr_patternExpr1016646
Expr1038816
Expr1156109
Expr2009713
Expr2027952
Drives_constructWBCnstr00025265
Construct_productWBCnstr00022560
WBCnstr00025265
Regulate_expr_clusterWBPaper00061902:camt-1(ok515)_regulated_AFD
WBPaper00061902:camt-1(ok515)_regulated_BAG
WBPaper00061902:camt-1(ok515)_regulated_RMG
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00061902:CAMT-1_interacting
Microarray_results (35)
Expression_clusterWBPaper00028867:HLH-1_induced_TF
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00036375:enriched_in_PVD_OLL
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:dopaminergic-neurons_larva_enriched
WBPaper00037950:dopaminergic-neurons_larva_SelectivelyEnriched
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038168:lin-15B(n744)_downregulated
WBPaper00042561:smgl-2(RNAi)_upregulated
WBPaper00044578:reduced-humidity_downregulated_microarray
WBPaper00044736:flat_dev_expression
WBPaper00045314:S.aureus-induced_N2
WBPaper00045316:prg-1_upregulated_L3
WBPaper00045390:tunicamycin_downregulated
WBPaper00045521:Oogenic
WBPaper00046805:csr-1(RNAi)_downregulated_Set1
WBPaper00048988:neuron_enriched
WBPaper00048988:neuron_expressed
WBPaper00050468:hlh-30-dependent_Cry5B_regulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:pharynx_expressed
WBPaper00050990:seam_expressed
WBPaper00051257:Levamisole_upregulated
WBPaper00051558:aging_regulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053295:lin-22(ot267)_downregulated
WBPaper00053295:lin-22(ot269)_downregulated
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
WBPaper00053321:PGCs_depleted_NuGen
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053599:female_vs_male_upregulated
WBPaper00053599:oocyte_vs_mitosis_downregulated
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055482:pmt-2(RNAi)_upregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056034:pals-25(jy9)_upregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056139:soil-microbiota_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056826:hmc_biased
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058691:sin-3(tm1276)_upregulated
WBPaper00058948:PA14_downregulated
WBPaper00059027:neuron-synapses_depleted
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00060459:bcat-1(RNAi)_upregulated
WBPaper00060661:sensory-neuron_enriched
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061527:flp-5-F17C11.2
WBPaper00061527:hlh-30_18579-unc-43_21739
WBPaper00061651:AFD_enriched
WBPaper00061651:AQR_enriched
WBPaper00061651:BDU_enriched
WBPaper00061651:PQR_enriched
WBPaper00061651:RIG_enriched
WBPaper00061651:URB_enriched
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00062103:neuron_enriched
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062590:Aging_upregulated_body-wall-muscle
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064315:mes-3(bn199)_upregulated_EGCs
WBPaper00064315:mes-4(bn73)_upregulated_PGCs
WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
WBPaper00064716:paraquat_downregulated
WBPaper00065086:JU1400_N.ferruginous_regulated
WBPaper00065086:N2_N.ausubeli_regulated
WBPaper00065120:body-muscle-transcriptome
WBPaper00065993:glp-1(e2141)_upregulated
cgc4489_group_13
cgc4489_group_22
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00031003:hlh_1_enriched
WBPaper00031252:AIN-2_IP_enriched
WBPaper00034757:up_by_oxidative_stress
WBPaper00035084:embryo_enriched_AIN-2_IP
WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
WBPaper00040426:CYD-1_CDK-4_downregulated
WBPaper00040426:CYE-1_CDK-2AF_downregulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040985:AIN-2_asynchronous_intestine
WBPaper00040985:AIN-2_L4_intestine
WBPaper00041002:HF_3d_2.0mM_Up
WBPaper00041002:HQ_3d_2.0mM_Up
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00042331:a-SWCNTs_downregulated
WBPaper00046853:AOBr_M.aeruginosa-batch-culture_downregulated
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
[cgc5767]:expression_class_M
[cgc5767]:expression_class_SM
Interaction (12)
Map_infoMapIIPosition-4.31047Error0.010436
PositivePositive_cloneT05C1Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00033395
WBPaper00038491
WBPaper00048493
WBPaper00055090
WBPaper00061738
WBPaper00061902
WBPaper00063687
WBPaper00065331
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene