WormBase Tree Display for Gene: WBGene00017852

WBGene00017852 SMap: S_parent: Sequence: F27C1
  Identity: Version: 1
    Name: Sequence_name: F27C1.2
      Molecular_name: F27C1.2a
        F27C1.2a.1
        CE09715
        F27C1.2b
        CE36932
        F27C1.2b.1
      Other_name: CELE_F27C1.2 Accession_evidence: NDB BX284601
      Public_name: F27C1.2
    DB_info: Database: AceView gene 1F999
        WormQTL gene WBGene00017852
        WormFlux gene WBGene00017852
        NDB locus_tag CELE_F27C1.2
        Panther gene CAEEL|WormBase=WBGene00017852|UniProtKB=Q6BEW1
          family PTHR12483
        NCBI gene 172196
        RefSeq protein NM_001026247.4
            NM_001026248.5
        TREEFAM TREEFAM_ID TF315142
        TrEMBL UniProtAcc Q6BEW1
            P91284
        UniProt_GCRP UniProtAcc Q6BEW1
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:59 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (20)
    RNASeq_FPKM (74)
    GO_annotation: 00050522
      00050523
      00050524
      00050525
      00050526
      00050527
      00123160
      00123161
      00123162
    Ortholog (38)
    Paralog: WBGene00010274 Caenorhabditis elegans From_analysis (3)
      WBGene00010277 Caenorhabditis elegans From_analysis (2)
      WBGene00017170 Caenorhabditis elegans From_analysis (2)
      WBGene00017954 Caenorhabditis elegans From_analysis (3)
      WBGene00021975 Caenorhabditis elegans From_analysis (3)
      WBGene00045053 Caenorhabditis elegans From_analysis (3)
      WBGene00044107 Caenorhabditis elegans From_analysis (3)
      WBGene00019674 Caenorhabditis elegans From_analysis (3)
      WBGene00045052 Caenorhabditis elegans From_analysis (3)
    Structured_description: Automated_description: Predicted to enable copper ion transmembrane transporter activity. Predicted to be involved in copper ion transmembrane transport. Predicted to be located in late endosome membrane. Is an ortholog of human SLC31A1 (solute carrier family 31 member 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F27C1.2a
      F27C1.2b
    Corresponding_CDS_history: F27C1.2:wp126
    Corresponding_transcript: F27C1.2a.1
      F27C1.2b.1
    Other_sequence (42)
    Associated_feature: WBsf643292
      WBsf643293
      WBsf643294
      WBsf217657
  Experimental_info: RNAi_result: WBRNAi00045724 Inferred_automatically: RNAi_primary
      WBRNAi00062024 Inferred_automatically: RNAi_primary
      WBRNAi00033278 Inferred_automatically: RNAi_primary
      WBRNAi00025267 Inferred_automatically: RNAi_primary
      WBRNAi00112311 Inferred_automatically: RNAi_primary
      WBRNAi00025268 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1014875
      Expr1037677
      Expr1149633
      Expr2003057
      Expr2021272
    Drives_construct: WBCnstr00026964
    Construct_product: WBCnstr00026964
    Microarray_results (23)
    Expression_cluster: WBPaper00005700:transmembrane_protein
      WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032528:L3_enriched
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00041370:spg-7(RNAi)_upregulated_atfs-1_dependent
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00045316:prg-1_upregulated_L3
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00045774:clk-1_upregulated
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049217:TCER-1_downregulated
      WBPaper00049368:daf-2(e1370)_upregulated
      WBPaper00049498:npr-1(ur89)_regulated_3
      WBPaper00049545:cco-1(RNAi)_upregulated
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050412:cco-1(RNAi)_upregulated_N2
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:body-wall-muscle_cytoplasm_expressed
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:epidermis_nucleus_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051245:intestine_nucleus_expressed
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053289:DREAM-target
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053810:clk-1(qm30)_upregulated
      WBPaper00053810:isp-1(qm150)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055354:Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055482:Tunicamycin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00056826:hmc_biased
      WBPaper00058969:RIS_enriched
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059471:EGL-43_interacting
      WBPaper00060084:cco-1(RNAi)_upregulated_lin-40(yth27)
      WBPaper00060278:atp-2(RNAi)_upregulated
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00060909:atfs-1(et18)_upregulated
      WBPaper00061527:F45H10.2-R53.4_21676
      WBPaper00061651:I5_enriched
      WBPaper00061651:MI_enriched
      WBPaper00061651:RIC_enriched
      WBPaper00061651:RIG_enriched
      WBPaper00061651:RIH_enriched
      WBPaper00061651:URB_enriched
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064716:paraquat_upregulated
      WBPaper00064871:hypoxia_downregulated_F1
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065158:AFD_depleted
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065841:48_0
      WBPaper00065945:epidermis-rpoa-2(-)_upregulated_protein
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4386_cluster_6_3
      WBPaper00025032:cluster_157
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00030985:Erwinia_carotovora_upregulated
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00034739:N2moreDR1350
      WBPaper00035084:L2_enriched_AIN-2_IP
      WBPaper00035084:L3_enriched_AIN-2_IP
      WBPaper00035084:L4_enriched_AIN-2_IP
      WBPaper00035905:FBF-1_Associated
      WBPaper00036286:Pattern_B
      WBPaper00037901:GLD-1_mRNA_targets
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00041370:spg-7(RNAi)_upregulated
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00048624:hlh-25(ok1710)_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00053236:daf-16(mgDF50)_regulated_Starved
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00057098:SiO2-nanoparticles_upregulated
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
      [cgc6390]:mixed_oogenesis-somatic
    Interaction: WBInteraction000032521
      WBInteraction000040439
      WBInteraction000123716
      WBInteraction000182222
      WBInteraction000383759
      WBInteraction000457285
      WBInteraction000559233
      WBInteraction000585664
  Map_info: Positive: Positive_clone: F27C1 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: I -0.00891104
  Reference: WBPaper00038491
    WBPaper00055090
  Method: Gene