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WormBase Tree Display for Gene: WBGene00015942

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Name Class

WBGene00015942SMapS_parentSequenceC18A3
IdentityVersion2
NameCGC_nameosta-2Person_evidenceWBPerson7115
WBPerson573
Sequence_nameC18A3.4
Molecular_nameC18A3.4a
C18A3.4a.1
CE01796
C18A3.4a.2
C18A3.4b
C18A3.4c
Other_nameCELE_C18A3.4Accession_evidenceNDBBX284602
Public_nameosta-2
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:56WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
229 Jun 2012 17:03:10WBPerson2970Name_changeCGC_nameosta-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classosta
Allele (68)
RNASeq_FPKM (74)
GO_annotation00060114
00060115
00060116
00060117
00060118
Ortholog (36)
ParalogWBGene00009574Caenorhabditis elegansFrom_analysisPanther
WBGene00012182Caenorhabditis elegansFrom_analysisPanther
WBGene00015287Caenorhabditis elegansFrom_analysisPanther
Structured_descriptionAutomated_descriptionPredicted to be located in membrane. Expressed in ciliated neurons. Human ortholog(s) of this gene implicated in progressive familial intrahepatic cholestasis. Is an ortholog of human SLC51A (solute carrier family 51 member A).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0070221Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:29955)
Molecular_infoCorresponding_CDSC18A3.4a
Corresponding_CDS_historyC18A3.4b:wp252
C18A3.4c:wp252
Corresponding_transcriptC18A3.4b
C18A3.4c
C18A3.4a.1
C18A3.4a.2
Other_sequence (23)
Associated_feature (12)
Experimental_infoRNAi_resultWBRNAi00010960Inferred_automaticallyRNAi_primary
WBRNAi00001413Inferred_automaticallyRNAi_primary
WBRNAi00001378Inferred_automaticallyRNAi_primary
WBRNAi00029046Inferred_automaticallyRNAi_primary
WBRNAi00040883Inferred_automaticallyRNAi_primary
Expr_patternExpr10834
Expr1024848
Expr1036817
Expr1144930
Expr2014652
Expr2032885
Drives_constructWBCnstr00017766
Microarray_results (44)
Expression_clusterWBPaper00031040:TGF-beta_adult_upregulated
WBPaper00032425:down_in_zfp-1
WBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00036375:enriched_in_PVD_OLL
WBPaper00037946:LIN-39_interacting
WBPaper00037950:bodywall-muscle_larva_enriched
WBPaper00037950:bodywall-muscle_larva_SelectivelyEnriched
WBPaper00037950:hypodermis_larva_enriched
WBPaper00037950:hypodermis_larva_SelectivelyEnriched
WBPaper00038061:aldicarb_upregulated
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00040221:DAF-12_target_ALF4
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00044786:emr-1(gk119)_upregulated
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
WBPaper00045050:csr-1(hypomorph)_downregulated
WBPaper00045521:Spermatogenic
WBPaper00046509:htz-1(ok3099)_upregulated
WBPaper00046805:csr-1(RNAi)_upregulated_Set1
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049001:EVN_enriched
WBPaper00050053:muscle_enriched_Day4
WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_24-cell-embryo
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050496:unc-39(hp701)_regulated
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:pharynx_expressed
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053321:embryo-to-L1_downregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
WBPaper00053388:dauer_regulated_Cluster1
WBPaper00053599:female_vs_male_downregulated
WBPaper00053599:oocyte_vs_mitosis_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055482:pmt-2(RNAi)_upregulated
WBPaper00055565:AVK_enriched
WBPaper00055648:sperm_expressed
WBPaper00055804:FBF-1-FBF-2-associated_spermatogenic-enriched
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056161:male_enriched_siRNA
WBPaper00056218:daf-16(mu86)_upregulated_Day7
WBPaper00056284:ints-5(RNAi)_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056826:SGP_biased
WBPaper00056855:his-72(uge40)_upregulated
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058969:RIS_enriched
WBPaper00059471:EGL-43_interacting
WBPaper00059763:neuron_expressed
WBPaper00059987:Wounding_upregulated
WBPaper00060459:bcat-1(RNAi)_upregulated
WBPaper00060661:sensory-neuron_enriched
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00061007:HB101_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:Anterior_arcade_cell
WBPaper00061340:B
WBPaper00061340:F_U
WBPaper00061340:ILso
WBPaper00061340:Parent_of_exc_duct_pore_DB_1_3
WBPaper00061340:Parent_of_hyp1V_and_ant_arc_V
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061479:hrde-1(tm1200)_upregulated
WBPaper00061527:snt-4_17845-T27C4.1
WBPaper00061651:IL2_DV_enriched
WBPaper00061651:IL2_LR_enriched
WBPaper00061651:RIF_enriched
WBPaper00061902:camt-1(ok515)_regulated_RMG
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00062520:qui-1(db104)_upregulated
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064716:paraquat_downregulated
WBPaper00064727:daf-2(e1370)_upregulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065258:anchor-cell_enriched
WBPaper00065841:118_0
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066085:hda-3(ok1991)_upregulated
WBPaper00066110:tetraploid_vs_diploid_upregulated
cgc4386_cluster_4_5
cgc4489_group_24
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00029437:dcr-1_upregulated
WBPaper00030985:Enterococcus_faecalis_upregulated
WBPaper00030985:Serratia_marcesens_upregulated
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00031252:AIN-1_IP_enriched
WBPaper00031252:AIN-2_IP_enriched
WBPaper00031532:Larva_Pan_Neuronal_Enriched
WBPaper00035084:L1_enriched_AIN-2_IP
WBPaper00035084:L2_enriched_AIN-2_IP
WBPaper00035084:L3_enriched_AIN-2_IP
WBPaper00035084:L4_enriched_AIN-2_IP
WBPaper00035873:dpy-9_regulated
WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2up
WBPaper00040210:Diazinon_24C_regulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040963:TA300_up
WBPaper00040985:AIN-2_asynchronous_muscle
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00047070:N2_UV_downregulated
WBPaper00048989:N2_rapamycin_upregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
WBPaper00057098:SiO2-nanoparticles_upregulated
[cgc5767]:expression_class_M
[cgc5767]:expression_class_SM
[cgc6390]:Cluster_C
Interaction (2)
Map_infoMapIIPosition-0.96482
PositivePositive_cloneC18A3Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene