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WormBase Tree Display for Gene: WBGene00000683

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Name Class

WBGene00000683EvidencePerson_evidenceWBPerson345
WBPerson651
SMapS_parentSequenceY38C1BA
IdentityVersion1
NameCGC_namecol-109Person_evidenceWBPerson345
Sequence_nameY38C1BA.3
Molecular_nameY38C1BA.3
Y38C1BA.3.1
CE21569
Other_nameCELE_Y38C1BA.3Accession_evidenceNDBBX284604
Public_namecol-109
DB_infoDatabaseAceViewgene4C582
WormQTLgeneWBGene00000683
WormFluxgeneWBGene00000683
NDBlocus_tagCELE_Y38C1BA.3
PanthergeneCAEEL|WormBase=WBGene00000683|UniProtKB=Q9N527
familyPTHR24637
NCBIgene176988
RefSeqproteinNM_067737.6
TrEMBLUniProtAccQ9N527
UniProt_GCRPUniProtAccQ9N527
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:21WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcol
Allele (74)
StrainWBStrain00055301
RNASeq_FPKM (74)
GO_annotation00095035
00095036
00095037
00095038
00105795
00107677
Ortholog (30)
Paralog (163)
Structured_descriptionConcise_descriptioncol-109 encodes a cuticular collagen; loss of col-109 via large-scale RNAi screens results in no obvious defects.Paper_evidenceWBPaper00027067
Curator_confirmedWBPerson1843
Date_last_updated27 Mar 2007 00:00:00
Automated_descriptionPredicted to be a structural constituent of cuticle. Involved in IRE1-mediated unfolded protein response. Predicted to be located in membrane. Predicted to be part of collagen trimer.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_info (4)
Experimental_infoRNAi_resultWBRNAi00056003Inferred_automaticallyRNAi_primary
WBRNAi00070728Inferred_automaticallyRNAi_primary
WBRNAi00001065Inferred_automaticallyRNAi_primary
WBRNAi00070729Inferred_automaticallyRNAi_primary
WBRNAi00020266Inferred_automaticallyRNAi_primary
WBRNAi00036835Inferred_automaticallyRNAi_primary
WBRNAi00020260Inferred_automaticallyRNAi_primary
Expr_patternExpr1019082
Expr1030407
Expr1159520
Expr2010306
Expr2028550
Microarray_results (21)
Expression_clusterWBPaper00024375:Up_vhl-1_vs_hif-1_vhl-1
WBPaper00031040:TGF-beta_adult_upregulated
WBPaper00032031:DConiospora_downregulated_cDNA_24h
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:germline-precursors_embryo_enriched
WBPaper00037950:germline-precursors_embryo_SelectivelyEnriched
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00038118:stress_upregulated_N2
WBPaper00038237:age-1_upregulated_intestine_rescue
WBPaper00038237:age-1_upregulated_neuron_rescue
WBPaper00038237:age-1_upregulated_nontransgenic
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00040134:nhr-49(RNAi)_regulated_protein
WBPaper00040285:H2S_24hr_downregulated
WBPaper00040560:hpl-2_L3_downregulated
WBPaper00042034:NO_upregulated_hsf-1(sy441)
WBPaper00042034:NO_upregulated_N2
WBPaper00042165:let-7_downregulated
WBPaper00042477:prp-8(RNAi)_downregulated_RNAseq
WBPaper00042477:rsr-2(RNAi)_downregulated_RNAseq
WBPaper00043945:MeHg_upregulated
WBPaper00044260:1-methylnicotinamide_upregulated
WBPaper00044260:nicotinc-acid_upregulated
WBPaper00044316:CH3HgCl_7.5uM_downregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044578:reduced-humidity_downregulated_microarray
WBPaper00044736:oscillating_dev_expression
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
WBPaper00044786:lem-2(tm1582)_upregulated
WBPaper00045257:bar-1(ga80)_downregulated
WBPaper00045417:128Q-huntingtin_downreglated
WBPaper00045774:clk-1_upregulated
WBPaper00045934:wrn-1(gk99)_downregulated
WBPaper00046337:polysomal_daf-2_vs_daf-2;daf-16_downregulated
WBPaper00046337:polysomal_N2_vs_daf-2_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
WBPaper00046497:B.thuringiensis_downregulated_protein
WBPaper00046527:glucose_upregulated
WBPaper00046805:P-granule-RNAi_downregulated_Set1
WBPaper00047132:glp-1(ts)-25C_upregulated
WBPaper00047132:glp-1(ts)-25C_upregulated_skn-1-dependent
WBPaper00048988:neuron_expressed
WBPaper00049018:swsn-2.2(RNAi)_downregulated
WBPaper00049134:hpk-1(pk1393)_upregulated
WBPaper00049159:Microwave_upregulated_L4
WBPaper00049334:CE_intestine_enriched
WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
WBPaper00049920:Glucose-Diet_upregulated_N2
WBPaper00049920:hyl-2(tm2031)_upregulated
WBPaper00049942:HeatShock_upregulated_hsf-1(+)
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050109:rBmTX14_upregulated
WBPaper00050717:let-7(n2853)_lin-41(xe11)_downregulated
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00050801:SET-4_dauer_regulome
WBPaper00050843:sesamin_downregulated
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00051245:epidermis_nucleus_expressed
WBPaper00051265:F1_morc-1(tm6048)_upregulated
WBPaper00051265:F4_hrde-1(tm1200)_downregulated
WBPaper00051265:F4_morc-1(tm6048)_downregulated
WBPaper00051404:alg-1(gk214)_downregulated
WBPaper00051404:alg-2(ok304)_downregulated
WBPaper00051558:aging_regulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053023:nrx-1(tm1961);nlg-1(ok259)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:alovudine_24h_regulated
WBPaper00053302:alovudine_72h_regulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053318:Aging_downregulated_mRNA_N2
WBPaper00053318:mir-71(n4115)_downregulated_mRNA
WBPaper00053388:dauer_regulated_Cluster4
WBPaper00053402:cco-1(RNAi)_downregulated
WBPaper00053657:JU2519_M.humicola-infection_12hr
WBPaper00053657:N2_M.humicola-infection_12hr
WBPaper00053771:up_at_dpy-7(e88)
WBPaper00054410:set-9(rw5)_downregulated
WBPaper00054410:set-26(tm2467)_downregulated
WBPaper00054493:hpl-2(tm1489)_upregulated
WBPaper00055013:hmg-3(bar24)_downregulated
WBPaper00055013:hmg-4(RNAi)_downregulated
WBPaper00055013:spt-16(RNAi)_downregulated
WBPaper00055049:S.gordonii_upregulated
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00055827:pfd-6(gk493446)_downregulated
WBPaper00055897:heat-shock_upregulated
WBPaper00055941:atfs-1(et15)_upregulated
WBPaper00055969:electromagnetic-field_upregulated
WBPaper00055971:nhl-2(ok818)_20C_downregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056039:ptl-1(ok621)_downregulated
WBPaper00056039:ptrn-1(tm5597)_downregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056090:hpx-2(dg047)_upregulated_E.faecalis
WBPaper00056139:soil-microbiota_upregulated
WBPaper00056167:Cry5B_downregulated
WBPaper00056167:ifo-1(kc2)_downregulated
WBPaper00056169:rrf-3(pk1426)_downregulated_adult
WBPaper00056169:rrf-3(pk1426)_downregulated_L4
WBPaper00056169:rrf-3(pk1426)_upregulated_L2
WBPaper00056284:ints-1(RNAi)_downregulated
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056290:mdt-15(mg584)_upregulated
WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
WBPaper00056330:glycine_downregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00056586:kri-1(ok1251)_upregulated
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057154:HeatShock_downregulated_miRNA-target
WBPaper00057154:HeatShock_upregulated_mRNA
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058711:wdr-5(ok1417)_upregulated
WBPaper00058948:npr-8(ok1439)_downregulated_OP50
WBPaper00058948:PA14_downregulated
WBPaper00058958:100mGy-irradiation-72h_upregulated
WBPaper00059117:B.subtilis_upregulated
WBPaper00059191:hsp-16.2p-LIN-29_upregulated
WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
WBPaper00059421:daf-1(m40);daf-3(mgDf90)_downregulated
WBPaper00059421:daf-1(m40)_upregulated
WBPaper00059421:daf-3(mgDf90)_downregulated
WBPaper00059566:wdr-23(mac32)_upregulated
WBPaper00059605:mut-16(pk710)_upregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059739:hira-1(gk835598)_downregulated_L4
WBPaper00059739:hira-1(gk835598)_upregulated_adult
WBPaper00059816:crh-1(n3315)_uprgulated
WBPaper00059824:rnp-6(dh1127)_regulated_OP50
WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
WBPaper00060100:SiNP_upregulated_mRNA
WBPaper00060273:isp-1(qm150)_upregulated
WBPaper00060273:vrk-1(RNAi)_downregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
WBPaper00060445:nfki-1(cer1)_downregulated_L1
WBPaper00060445:nfki-1(cer1)_downregulated_L4
WBPaper00060459:bcat-1(RNAi)_upregulated
WBPaper00060479:sid-2(mj465)_upregulated
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00060703:nas-38(ok3407)_upregulated
WBPaper00060764:swsn-1(os22ts)_upregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00061007:HB115_upregulated
WBPaper00061007:M.braciatum_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061007:X.citri_upregulated
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061081:skpo-1(ok1640)_upregulated_OP50
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:AMso
WBPaper00061340:ant_arc_V
WBPaper00061340:hyp1_hyp2
WBPaper00061341:28C_48h_upregulated
WBPaper00061424:Diet_MYb120_upregulated
WBPaper00061424:Diet_MYb131_upregulated
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061479:hrde-1(tm1200)_upregulated
WBPaper00061479:prg-1(tm872)_upregulated
WBPaper00061479:ubc-9(ne4833)_upregulated
WBPaper00061527:R12E2.14_75-R12E2.15
WBPaper00061651:AMso_enriched
WBPaper00061902:camt-1(ok515)_regulated_RMG
WBPaper00061995:mter-4(syb3662syb3403)_downregulated
WBPaper00062118:neural-HSF-1_downregulated
WBPaper00062156:jmjd-1.2(zr1010)_upregulated
WBPaper00062156:jmjd-5(zr1234)_upregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062345:bortezomib_4h_upregulated_N2
WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
WBPaper00062446:nhr-8(hd117)_upregulated
WBPaper00062456:doxycycline_upregulated_N2_transcript
WBPaper00062534:fat-P-80_downregulated
WBPaper00062534:fat-P-80_downregulated_ech-6(RNAi)
WBPaper00062590:Aging_downregulated_neuron
WBPaper00062715:blmp-1(s71)_upregulated
WBPaper00064005:starvation_downregulated_aptf-1(gk794)_mRNA
WBPaper00064005:starvation_downregulated_N2_mRNA
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064107:lin-35(n745)_downregulated
WBPaper00064122:vulva_transcriptome
WBPaper00064156:lipl-4(overexpress)_upregulated
WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
WBPaper00064291:antimycin_upregulated
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064403:Heat-killed-E.Coli_upregulated
WBPaper00064539:nhr-114(gk849)_downregulated
WBPaper00064661:lpd-3(ok2138)_upregulated
WBPaper00064716:paraquat_upregulated
WBPaper00064721:fasn-1(g14)_downregulated_starved
WBPaper00064727:daf-2(e1370)_upregulated
WBPaper00064728:cpl-1(W32AY35A)_upregulated
WBPaper00064788:ketamine_upregulated
WBPaper00065029:cadmium_downregulated
WBPaper00065074:glna(-)_downregulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C
WBPaper00065120:body-muscle-transcriptome
WBPaper00065258:anchor-cell_enriched
WBPaper00065392:Lb.delbrueckii_upregulated
WBPaper00065392:Lb.gasseri_upregulated
WBPaper00065392:Lb.reuteri_upregulated
WBPaper00065392:Lb.rhamnosus_upregulated
WBPaper00065392:P.pentosaceus_upregulated
WBPaper00065560:E.coli-HB101_downregulated_F3
WBPaper00065560:E.coli-HB101_downregulated_P0
WBPaper00065581:hpk-1(pk1393)_upregulated
WBPaper00065746:eat-2(ad1113)_downregulated
WBPaper00065749:endu-2(tm4977)_upregulated
WBPaper00065759:dot-1.1(knu339)_upregulated
WBPaper00065841:35_0
WBPaper00065841:82_0
WBPaper00065841:82_1
WBPaper00065841:85_0
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065984:pals-17(syb3980)_downregulated
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066093:E.coli-purE_upregulated
WBPaper00066110:Cisplatin_upregulated_diploid
WBPaper00066110:Doxorubicin_upregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066232:ash-2(RNAi)_downregulated_WT
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
WBPaper00066232:hsf-1(RNAi)_upregulated_WT
cgc4386_cluster_2_4
cgc4489_group_1
cgc4489_group_23
WBPaper00024671:AFD_AWB_vs_unsorted_downregulated
WBPaper00025099:MA_specific
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:Resveratrol_regulated_N2
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00028789:PA14_vs_gacA_downregulated_8hr
WBPaper00030839:Larval_A_Class
WBPaper00030985:Serratia_marcesens_upregulated
WBPaper00031003:0hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00031252:AIN-2_IP_enriched
WBPaper00031532:Larva_Pan_Neuronal_Depleted
WBPaper00032062:age_regulated_genes
WBPaper00032948:FedUp
WBPaper00033101:spr-5_regulated
WBPaper00035588:alg-1(-)_upregulated
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00035873:osm-8_regulated
WBPaper00035905:FBF-1_Associated
WBPaper00036130:mir-243_up_regulated
WBPaper00036286:Pattern_G
WBPaper00036375:depleted_in_PVD_OLL
WBPaper00037113:CPF_16C_down-regulated
WBPaper00038060:SUMO-1_downregulated
WBPaper00038172:crh-1null_down_regulated
WBPaper00038172:tax-6null_down_regulated
WBPaper00038304:octr-1_regulated
WBPaper00040116:pRJ-FR.5_down_regulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040823:alg-1(gk214)_upregulated
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040876:mir-35_downregulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00042258:DA1877_downregulated_YoungAdult
WBPaper00042274:tbx-2(bx59)_upregulated
WBPaper00042331:a-SWCNTs_downregulated
WBPaper00042574:rde-1(ne219)_OrsayVirus_upregulated
WBPaper00045015:nhr-25(RNAi)_upregulated
WBPaper00045673:colistin_upregulated
WBPaper00046083:oga-1(ok1207)_OP50_downregulated
WBPaper00046083:ogt-1(ok1474)_OP50_downregulated
WBPaper00046083:pmk-1(km25)_OP50_downregulated
WBPaper00046548:dafachronic-acid_downregulated
WBPaper00046853:AOBr_M.aeruginosa-batch-culture_downregulated
WBPaper00047070:N2_starvation_downregulated
WBPaper00047070:N2_UV_downregulated
WBPaper00047070:xpa-1_UV_downregulated
WBPaper00048624:hlh-25(ok1710)_upregulated
WBPaper00048637:lin-35(n745)_starvation_upregulated
WBPaper00048989:eat-2(ad465)_downregulated_in-DMSO
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00048989:N2_allantoin_downregulated
WBPaper00048989:N2_rapamycin_upregulated
WBPaper00049311:sAg-MNP_regulated
WBPaper00050515:nipi-3(fr4)_upregulated
WBPaper00050650:mBmkTX_upregulated
WBPaper00053550:daf-19(m86)_downregulated_L1
WBPaper00055899:nitroguanidine_regulated
[cgc6390]:Cluster_C
[cgc6390]:male_sex-enriched
Interaction (23)
Map_infoMapIVPosition-15.7597Error0.0722
PositivePositive_cloneY38C1BAInferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00027067
WBPaper00060839
WBPaper00062388
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene