WormBase Tree Display for Gene: WBGene00006963

WBGene00006963 SMap: S_parent: Sequence: K07G5
  Identity: Version: 2
    Name: CGC_name: xpa-1
      Sequence_name: K07G5.2
      Molecular_name: K07G5.2
        K07G5.2.1
        CE06130
      Other_name: rad-3
        CELE_K07G5.2 Accession_evidence: NDB BX284601
      Public_name: xpa-1
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:44 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 07 Mar 2008 11:17:28 WBPerson2970 Event: Acquires_merge: WBGene00004290
              Name_change: Other_name: rad-3
      Acquires_merge: WBGene00004290
    Status: Live
  Gene_info (11)
  Disease_info: Potential_model: DOID:0110843 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:12814)
      DOID:0050427 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:12814)
  Molecular_info: Corresponding_CDS: K07G5.2
    Corresponding_transcript: K07G5.2.1
    Other_sequence (24)
    Associated_feature: WBsf984110
      WBsf217957
  Experimental_info: RNAi_result (11)
    Expr_pattern: Expr2648
      Expr8011
      Expr1028701
      Expr1032974
      Expr1153892
      Expr2018100
      Expr2036238
    Drives_construct: WBCnstr00013056
      WBCnstr00034066
    Construct_product: WBCnstr00013056
      WBCnstr00034066
    Regulate_expr_cluster: WBPaper00042234:xpa-1_upregulated
    Microarray_results (21)
    Expression_cluster: WBPaper00024245:gst-5-binding_ROS-stressed
      WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00045521:Gender_Neutral
      WBPaper00045974:NSM_enriched_totalRNA_tiling
      WBPaper00048611:MnCl2_downregulated
      WBPaper00048762:FOG-3_associated
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049498:npr-1(ur89)_regulated_3
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053321:PGCs_enriched_NuGen
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00054792:FOG-3_interacting
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056034:pals-22(jy3)_downregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056826:SGP_biased
      WBPaper00057288:Cold_upregulated_transcript
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059471:EGL-43_interacting
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061203:let-418(n3536)_upregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061479:HDA-1_interacting_protein
      WBPaper00061527:cyn-10_19153-K12H4.2
      WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
      WBPaper00062056:lin-35(n745)_upregulated
      WBPaper00062193:hsf-1(RNAi)_downregulated
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4386_cluster_5_3
      WBPaper00013462:daf-2_age_regulated
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00035084:L1_enriched_AIN-2_IP
      WBPaper00035084:L2_enriched_AIN-2_IP
      WBPaper00035905:FBF-1_Associated
      WBPaper00036286:Pattern_F
      WBPaper00037147:heatshock_upregulated
      WBPaper00037611:RNP-8-associated
      WBPaper00037901:GLD-1_mRNA_targets
      WBPaper00038427:lin-54_embryo_changed
      WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00041002:HF_3d_2.0mM_Up
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:control_vs_UVC-exposed_51h
      WBPaper00042234:xpa-1_upregulated
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(122_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MDE
      [cgc5767]:expression_class_MD_pd(23_min)
      [cgc5767]:expression_class_ME
      [cgc6390]:Cluster_E
      [cgc6390]:intrinsic
    Interaction (87)
    WBProcess: WBbiopr:00000001
      WBbiopr:00000091
  Map_info: Map: I Position: 1.81181 Error: 0.00278
    Positive: Positive_clone: K07G5 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4760
        364
        365
  Reference: WBPaper00000565
    WBPaper00000663
    WBPaper00000726
    WBPaper00000733
    WBPaper00000994
    WBPaper00001000
    WBPaper00001068
    WBPaper00001093
    WBPaper00001154
    WBPaper00001258
    WBPaper00001335
    WBPaper00001426
    WBPaper00001460
    WBPaper00001495
    WBPaper00001699
    WBPaper00001776
    WBPaper00002199
    WBPaper00002394
    WBPaper00003293
    WBPaper00003311
    WBPaper00005436
    WBPaper00013837
    WBPaper00013943
    WBPaper00014016
    WBPaper00015284
    WBPaper00015598
    WBPaper00016249
    WBPaper00016432
    WBPaper00017690
    WBPaper00019141
    WBPaper00024764
    WBPaper00025894
    WBPaper00026064
    WBPaper00027176
    WBPaper00027223
    WBPaper00027418
    WBPaper00027694
    WBPaper00029176
    WBPaper00029334
    WBPaper00030838
    WBPaper00031296
    WBPaper00031442
    WBPaper00031760
    WBPaper00031945
    WBPaper00032410
    WBPaper00035429
    WBPaper00036135
    WBPaper00036260
    WBPaper00036831
    WBPaper00036936
    WBPaper00037044
    WBPaper00037628
    WBPaper00037879
    WBPaper00038491
    WBPaper00040448
    WBPaper00040826
    WBPaper00041255
    WBPaper00041717
    WBPaper00042234
    WBPaper00044163
    WBPaper00044725
    WBPaper00045612
    WBPaper00046901
    WBPaper00047617
    WBPaper00049795
    WBPaper00050566
    WBPaper00051192
    WBPaper00053104
    WBPaper00055090
    WBPaper00057093
    WBPaper00060037
    WBPaper00060267
    WBPaper00060474
    WBPaper00061894
    WBPaper00062203
    WBPaper00062826
    WBPaper00064339
    WBPaper00065149
  Method: Gene