WormBase Tree Display for Gene: WBGene00004138

WBGene00004138 SMap: S_parent: Sequence: R07B7
  Identity: Version: 1
    Name: CGC_name: pqn-53 Person_evidence: WBPerson625
      Sequence_name: R07B7.3
      Molecular_name: R07B7.3a
        R07B7.3a.1
        CE42927
        R07B7.3b
      Other_name: CELE_R07B7.3 Accession_evidence: NDB BX284605
      Public_name: pqn-53
    DB_info: Database: AceView gene 5M544
        WormQTL gene WBGene00004138
        WormFlux gene WBGene00004138
        NDB locus_tag CELE_R07B7.3
        NCBI gene 179656
        RefSeq protein NR_024311.1
            NM_073622.6
        TREEFAM TREEFAM_ID TF317724
        TrEMBL UniProtAcc Q21793
        UniProt_GCRP UniProtAcc Q21793
        RNAcentral URSid URS00001EAE26
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:34 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pqn
    Allele (24)
    Strain: WBStrain00037780
    RNASeq_FPKM (74)
    GO_annotation: 00072853
    Contained_in_operon: CEOP5320
    Ortholog (19)
    Paralog: WBGene00011088 Caenorhabditis elegans From_analysis: Inparanoid_8
    Structured_description: Concise_description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). Paper_evidence: WBPaper00005068
            WBPaper00012788
            WBPaper00012830
            WBPaper00012882
            WBPaper00012897
            WBPaper00013003
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Located in nucleus. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R07B7.3a
    Corresponding_CDS_history: R07B7.3:wp193
    Corresponding_transcript: R07B7.3b
      R07B7.3a.1
    Other_sequence: CRC00742_1
      CRC05217_1
      CJC03448_1
      CR00435
      FD515773.1
      CSC02087_1
      CRC05604_1
      CJC04222_1
      CBC01263_1
      CBC14405_1
      CJC15167_1
      CRC01521_1
      CGC00534_1
    Associated_feature: WBsf653183
      WBsf653184
      WBsf669466
      WBsf234614
      WBsf234615
      WBsf234616
  Experimental_info: RNAi_result: WBRNAi00034689 Inferred_automatically: RNAi_primary
      WBRNAi00017521 Inferred_automatically: RNAi_primary
      WBRNAi00051436 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr9487
      Expr1028249
      Expr1032012
      Expr1155124
      Expr2015058
      Expr2033293
    Drives_construct: WBCnstr00035675
    Construct_product: WBCnstr00014052
      WBCnstr00035675
    Microarray_results (22)
    Expression_cluster: WBPaper00028451:Low_abundance_spermatogenesis_enriched
      WBPaper00032425:down_in_zfp-1
      WBPaper00032528:L3_enriched
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037055:DAF-16_binding_DNA
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038118:aak-2(gt33)_upregulated
      WBPaper00038289:oocyte_protein
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00040990:PA14_upregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045380:cep-1(gk138)_upregulated_UV
      WBPaper00045774:clk-1_upregulated
      WBPaper00046161:Q40-aggregate-protein_Day4_Sarcosyl-insoluble
      WBPaper00046161:Q40-aggregate-protein_Day4_Sarcosyl-soluble
      WBPaper00046161:Q40-aggregate-protein_Day7_Sarcosyl-insoluble
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050496:unc-39(hp701)_regulated
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053814:25C_downregulated_OP50
      WBPaper00053814:25C_downregulated_PY79
      WBPaper00055060:flr-1(RNAi)_upregulated
      WBPaper00055482:pmt-2(RNAi)_upregulated
      WBPaper00055626:pry-1(mu38)_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00056826:hmc_biased
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00057288:Cold_upregulated_transcript
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_protein
      WBPaper00059471:EGL-43_interacting
      WBPaper00059598:HeatShock_downregulated
      WBPaper00059763:neuron_expressed
      WBPaper00060014:set-2(zr2012)_downregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061377:MYRF-2_interacting
      WBPaper00061527:cids-2_2203-attf-2_2451
      WBPaper00062143:PQN-59_interacting
      WBPaper00062293:isp-1(qm150)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062498:PPM-1.D_interacting
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064130:Beta-Amyloid_downregulated_protein
      WBPaper00064163:ZNFX-1_interacting_young-adult
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065258:anchor-cell_enriched
      WBPaper00065945:epidermis-rpoa-2(-)_downregulated_protein
      cgc4386_cluster_6_2
      WBPaper00025032:cluster_138
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00032948:StarveUp2
      WBPaper00040210:Chlorpyrifos_24C_regulated
      WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00040985:AIN-2_asynchronous_intestine
      WBPaper00041002:HF_3d_0.2mM_Down
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00042234:xpa-1_upregulated
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00048989:N2_allantoin_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:cluster_2
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(23_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
      [cgc6390]:herm_sex-enriched
    Interaction (22)
  Map_info: Map: V Position: 3.62372 Error: 0.000837
    Positive: Positive_clone: R07B7 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038444
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene