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WormBase Tree Display for Gene: WBGene00015251

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Name Class

WBGene00015251SMapS_parentSequenceB0546
IdentityVersion1
NameSequence_nameB0546.4
Molecular_name (6)
Other_nameCELE_B0546.4Accession_evidenceNDBBX284604
Public_nameB0546.4
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:55WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (22)
RNASeq_FPKM (74)
GO_annotation00032412
00032413
Contained_in_operonCEOP4084
Ortholog (35)
ParalogWBGene00009503Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00015250Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00010847Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00013718Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00017765Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00021355Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00021564Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable metal ion binding activity. Predicted to be part of ubiquitin ligase complex. Is an ortholog of human YPEL5 (yippee like 5).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSB0546.4a
B0546.4c
Corresponding_CDS_historyB0546.4b:wp275
Corresponding_transcriptB0546.4a.1
B0546.4c.1
Other_sequenceCBC03757_1
Associated_featureWBsf667834
WBsf667835
WBsf995948
WBsf995949
WBsf1017069
WBsf229886
WBsf229887
Experimental_infoRNAi_resultWBRNAi00028202Inferred_automaticallyRNAi_primary
WBRNAi00009849Inferred_automaticallyRNAi_primary
WBRNAi00039184Inferred_automaticallyRNAi_primary
Expr_patternExpr1028513
Expr1036534
Expr1143329
Expr2000238
Expr2018459
Microarray_results (24)
Expression_clusterWBPaper00032425:down_in_rde-4
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00034761:hlh-30_downregulated
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:dopaminergic-neurons_larva_enriched
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:hypodermis_larva_enriched
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00037950:PVD-OLL-neurons_larva_enriched
WBPaper00040221:DAF-12_target_ALF4
WBPaper00041370:spg-7(RNAi)_upregulated_atfs-1_dependent
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00044786:emr-1(gk119)_downregulated
WBPaper00045314:S.aureus-induced_N2
WBPaper00045521:Gender_Neutral
WBPaper00045774:clk-1_upregulated
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
WBPaper00046509:htz-1(ok3099)_upregulated
WBPaper00048690:hermaphrodite-Z1-Z4_enriched
WBPaper00048690:male-Z1-Z4_enriched
WBPaper00048988:neuron_expressed
WBPaper00049495:starvation-refeeding_regulated
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00050094:mes-2(bn11)_downregulated
WBPaper00050344:PLM-neuron_enriched
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050686:glp-1(e2141)_upregulated
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050859:downregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:pharynx_expressed
WBPaper00051039:germline_enriched
WBPaper00051257:Levamisole_upregulated
WBPaper00051558:fog-2(q71)_regulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053295:lin-22(ot267)_downregulated
WBPaper00053295:lin-22(ot269)_downregulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00055482:pmt-2(RNAi)_upregulated
WBPaper00055648:germline_expressed
WBPaper00056165:MINA-1_interacting_mRNA
WBPaper00056275:P.aeruginosa_upregulated
WBPaper00056275:P.aeruginosa_upregulated_atf-7(qd22qd130)_dependent
WBPaper00056275:P.aeruginosa_upregulated_pmk-1(km25)_dependent
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056826:SGP_biased
WBPaper00057068:Cadmium_upregulated
WBPaper00058691:sin-3(tm1276)_upregulated
WBPaper00058948:PA14_downregulated
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059356:set-6(ok2195)_baz-2(tm0235)_regulated
WBPaper00059471:EGL-43_interacting
WBPaper00059763:neuron_expressed
WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
WBPaper00059987:Wounding_upregulated
WBPaper00060084:cco-1(RNAi)_upregulated_N2
WBPaper00060634:fhod-1(tm2363)_upregulated
WBPaper00060661:sensory-neuron_enriched
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00061007:HB101_downregulated
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061527:cdc-42_17192-rab-5_18073
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062325:etr-1(lq61)_downregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062590:Aging_upregulated_body-wall-muscle
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064494:postdauer_downregulated_AWA
WBPaper00064539:nhr-114(gk849)_upregulated
WBPaper00065199:Transgeneration-starvation_regulated_fed
WBPaper00065258:anchor-cell_enriched
WBPaper00065975:P-body_vs_oocyte_enriched
WBPaper00065975:P-body_vs_WholeAnimal_enriched
WBPaper00065995:M.humicola-extract_downregulated_N2
WBPaper00066062:xrep-4(lax137)_upregulated
cgc4489_group_12
WBPaper00005124:testosterone_10-9M_regulated
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00030839:Embryo_Pan_Neuronal
WBPaper00030839:Larval_Pan_Neuronal
WBPaper00031003:0hr_muscle_enriched
WBPaper00031003:total_muscle_enriched
WBPaper00032948:StarveUp2
WBPaper00035227:heat_shock_regulated
WBPaper00035905:FBF-1_Associated
WBPaper00036286:Pattern_F
WBPaper00037611:RNP-8-associated
WBPaper00037695:WC_CC_6-day
WBPaper00038231:Cry5B_1.5-fold_upregulated
WBPaper00038231:Cry5B_2-fold_upregulated
WBPaper00041370:spg-7(RNAi)_upregulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00045015:nhr-25(RNAi)_upregulated
WBPaper00045960:L1-L4-lethargus_upregulated
WBPaper00045960:L4-lethargus_upregulated
WBPaper00047070:N2_starvation_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
WBPaper00055899:nitroguanidine_regulated
WBPaper00057098:SiO2-nanoparticles_upregulated
[cgc5376]:let-60(G12V)-regulated_genes
[cgc5767]:cluster_1
[cgc5767]:expression_class_M
[cgc5767]:expression_class_SM
[cgc6390]:Cluster_A
InteractionWBInteraction000178876
WBInteraction000190624
WBInteraction000211610
WBInteraction000241272
WBInteraction000264617
WBInteraction000277411
WBInteraction000303107
WBInteraction000348471
WBInteraction000377481
WBInteraction000380008
WBInteraction000398567
WBInteraction000400741
WBInteraction000408705
WBInteraction000422292
WBInteraction000425067
WBInteraction000428617
WBInteraction000442323
WBInteraction000443394
WBInteraction000460670
Map_infoPositivePositive_cloneB0546Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIV-4.55688
ReferenceWBPaper00038491
WBPaper00055090
MethodGene