WormBase Tree Display for Gene: WBGene00017765
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| WBGene00017765 | SMap | S_parent | Sequence | F25B4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | gcst-1 | Person_evidence | WBPerson1997 | |||||
| Sequence_name | F25B4.1 | ||||||||
| Molecular_name | F25B4.1 | ||||||||
| F25B4.1.1 | |||||||||
| CE09620 | |||||||||
| Other_name | CELE_F25B4.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | gcst-1 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 24 May 2012 16:35:53 | WBPerson2970 | Name_change | CGC_name | gcst-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gcst | ||||||||
| Allele (38) | |||||||||
| Strain | WBStrain00001589 | ||||||||
| WBStrain00002381 | |||||||||
| WBStrain00037899 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00076858 | ||||||||
| 00076859 | |||||||||
| 00076860 | |||||||||
| 00076861 | |||||||||
| 00076862 | |||||||||
| 00076863 | |||||||||
| 00076864 | |||||||||
| 00123078 | |||||||||
| 00123079 | |||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00010847 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00009503 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00013718 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00015250 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00015251 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00021355 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00021564 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | gcst-1 is orthologous to the human gene GLYCINE CLEAVAGE SYSTEM T-PROTEIN (AMT; OMIM:238310), which when mutated leads to glycine encephalopathy. | Curator_confirmed | WBPerson1823 | |||||
| WBPerson567 | |||||||||
| Date_last_updated | 06 Aug 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable aminomethyltransferase activity and transaminase activity. Predicted to be involved in glycine catabolic process. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in glycine encephalopathy. Is an ortholog of human AMT (aminomethyltransferase). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:9268 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:473) | ||||
| Molecular_info | Corresponding_CDS | F25B4.1 | |||||||
| Corresponding_transcript | F25B4.1.1 | ||||||||
| Other_sequence (63) | |||||||||
| Associated_feature | WBsf646823 | ||||||||
| WBsf231790 | |||||||||
| WBsf231791 | |||||||||
| WBsf231792 | |||||||||
| WBsf231793 | |||||||||
| WBsf231794 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00013845 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00113373 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00045465 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00106967 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113372 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033334 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram211 | ||||||||
| Chronogram1570 | |||||||||
| Expr5844 | |||||||||
| Expr5845 | |||||||||
| Expr1028954 | |||||||||
| Expr1037629 | |||||||||
| Expr1149384 | |||||||||
| Expr2011975 | |||||||||
| Expr2030212 | |||||||||
| Drives_construct | WBCnstr00002429 | ||||||||
| WBCnstr00004340 | |||||||||
| WBCnstr00027038 | |||||||||
| Construct_product | WBCnstr00027038 | ||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (134) | |||||||||
| Interaction (106) | |||||||||
| Map_info | Map | V | Position | -1.16141 | |||||
| Positive | Positive_clone | F25B4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00042204 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
