WormBase Tree Display for Gene: WBGene00003596

WBGene00003596 Evidence: Author_evidence: Slack FJ
  SMap: S_parent: Sequence: T19A6
  Identity: Version: 1
    Name: CGC_name: ngp-1 Person_evidence: WBPerson599
      Sequence_name: T19A6.2
      Molecular_name: T19A6.2a
        T19A6.2a.1
        CE32493
        T19A6.2b
        CE32494
        T19A6.2b.1
      Other_name: CELE_T19A6.2 Accession_evidence: NDB BX284601
      Public_name: ngp-1
    DB_info: Database: AceView gene 1I973
        WormQTL gene WBGene00003596
        WormFlux gene WBGene00003596
        NDB locus_tag CELE_T19A6.2
        Panther gene CAEEL|WormBase=WBGene00003596|UniProtKB=Q9XXN4
          family PTHR11089
        NCBI gene 172624
        RefSeq protein NM_059874.6
            NM_001392677.1
        TREEFAM TREEFAM_ID TF105668
        TrEMBL UniProtAcc Q9U365
            Q9XXN4
        UniProt_GCRP UniProtAcc Q9XXN4
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:32 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ngp
    Allele (48)
    Strain: WBStrain00003165
    RNASeq_FPKM (74)
    GO_annotation: 00099996
      00099997
      00099998
      00099999
      00100000
      00111198
    Contained_in_operon: CEOP1472
    Ortholog (40)
    Paralog: WBGene00003821 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00013001 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00016907 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00022054 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable GTP binding activity. Predicted to be located in nucleolus. Is an ortholog of human GNL2 (G protein nucleolar 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T19A6.2a
      T19A6.2b
    Corresponding_CDS_history: T19A6.2a:wp90
      T19A6.2b:wp90
      T19A6.2c:wp274
    Corresponding_transcript: T19A6.2a.1
      T19A6.2b.1
    Other_sequence (84)
    Associated_feature: WBsf984419
      WBsf984420
      WBsf1010227
      WBsf218150
  Experimental_info: RNAi_result: WBRNAi00077299 Inferred_automatically: RNAi_primary
      WBRNAi00026305 Inferred_automatically: RNAi_primary
      WBRNAi00116783 Inferred_automatically: RNAi_primary
      WBRNAi00035644 Inferred_automatically: RNAi_primary
      WBRNAi00004224 Inferred_automatically: RNAi_primary
      WBRNAi00053485 Inferred_automatically: RNAi_primary
      WBRNAi00001175 Inferred_automatically: RNAi_primary
      WBRNAi00077312 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram2000
      Expr6709
      Expr1023236
      Expr1031645
      Expr1157050
      Expr2013993
      Expr2032233
    Drives_construct: WBCnstr00003641
      WBCnstr00036016
    Construct_product: WBCnstr00036016
    Microarray_results (35)
    Expression_cluster: WBPaper00028451:Low_abundance_spermatogenesis_enriched
      WBPaper00029359_1197
      WBPaper00029359_1225
      WBPaper00029359_1291
      WBPaper00029359_1367
      WBPaper00029359_1483
      WBPaper00029359_1494
      WBPaper00029359_1546
      WBPaper00029359_1561
      WBPaper00029359_1692
      WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032031:DConiospora_upregulated_cDNA_24h
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_larva_enriched
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:coelomocytes_larva_enriched
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:hypodermis_larva_enriched
      WBPaper00037950:intestine_embryo_enriched
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_larva_enriched
      WBPaper00040209:B.thuringiensis_downregulated_MY15
      WBPaper00040209:B.thuringiensis_upregulated_MY18
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00042215:wdr-23(tm1817)_upregulated
      WBPaper00044426:rotenone_24h_downregulated
      WBPaper00044501:gld-1_let-7_regulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044743:wdr-23_neuron_upregulated
      WBPaper00045314:S.aureus-induced_hlh-30(tm1978)
      WBPaper00045314:S.aureus-induced_N2
      WBPaper00045521:Gender_Neutral
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
      WBPaper00046858:elt-2(RNAi)_downregulated
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049159:Microwave_upregulated_adult
      WBPaper00049290:rsks-1(sv31)_downregulated
      WBPaper00049368:daf-2(e1370)_upregulated
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050686:glp-1(e2141)_downregulated
      WBPaper00050698:DEP-1_interacting
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:body-wall-muscle_nucleus_expressed
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:epidermis_nucleus_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051245:intestine_nucleus_expressed
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053321:embryo-to-L1_upregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053599:mitosis_vs_meiosis_upregulated
      WBPaper00053599:oocyte_vs_mitosis_upregulated
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00055226:ADR-2_target_N2
      WBPaper00055648:germline_expressed
      WBPaper00055969:electromagnetic-field_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056034:pals-25(jy9)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056826:SGP_biased
      WBPaper00057083:daf-2(e1370)rsks-1(ok1255)_post-transcriptional_downregulated
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00059471:EGL-43_interacting
      WBPaper00059605:MUT-16_interacting
      WBPaper00060278:atp-2(RNAi)_upregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060683:hlh-11(ko1)_upregulated
      WBPaper00061274:hypergravity_15xg_downregulated
      WBPaper00061340:M_cell
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061527:B0511.6_180-Y54E10BR.4_1509
      WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062498:PPM-1.D_interacting
      WBPaper00062520:qui-1(db104)_downregulated
      WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064315:mes-4(bn73)_downregulated_EGCs
      WBPaper00064871:hypoxia_downregulated_F2
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065373:sek-1(km4)_downregulated_cisplatin
      WBPaper00065841:11_0
      WBPaper00065975:P-body_vs_oocyte_depleted
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00005124:progesterone_10-9M_regulated
      WBPaper00024393:strongly_regulated_dauer_genes
      WBPaper00025032:cluster_45
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026980:intestine_enriched
      WBPaper00030985:Photorhabdus_luminescens_downregulated
      WBPaper00030985:Serratia_marcesens_downregulated
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00032062:age_regulated_genes
      WBPaper00032948:StarveUp3
      WBPaper00036429:glp-1(oz112)_upregulated
      WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_regulated_old
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00041207:CE_dauer_up
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00047070:DAF-16-dependent_UV_response
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00057098:SiO2-nanoparticles_upregulated
      [cgc5767]:cluster_16
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(66_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
      [cgc6390]:herm_sex-enriched
    Interaction: WBInteraction000034043
      WBInteraction000034730
      WBInteraction000035397
      WBInteraction000035564
      WBInteraction000035565
      WBInteraction000035566
      WBInteraction000035691
      WBInteraction000035986
      WBInteraction000036677
      WBInteraction000036678
      WBInteraction000036679
      WBInteraction000036705
      WBInteraction000036938
      WBInteraction000037691
      WBInteraction000037746
      WBInteraction000037803
      WBInteraction000038821
      WBInteraction000038822
      WBInteraction000040012
      WBInteraction000040355
      WBInteraction000040802
      WBInteraction000040835
      WBInteraction000040836
      WBInteraction000040837
      WBInteraction000042753
      WBInteraction000043015
      WBInteraction000043475
      WBInteraction000044340
      WBInteraction000044341
      WBInteraction000044342
      WBInteraction000044958
      WBInteraction000045003
      WBInteraction000045004
      WBInteraction000045005
      WBInteraction000045141
      WBInteraction000045142
      WBInteraction000045197
      WBInteraction000045263
      WBInteraction000045316
      WBInteraction000045317
      WBInteraction000045318
      WBInteraction000046033
      WBInteraction000046834
      WBInteraction000047839
      WBInteraction000048065
      WBInteraction000048066
      WBInteraction000048181
      WBInteraction000048227
      WBInteraction000048228
      WBInteraction000048229
      WBInteraction000048230
      WBInteraction000048231
      WBInteraction000048232
      WBInteraction000048233
      WBInteraction000048234
      WBInteraction000048235
      WBInteraction000048236
      WBInteraction000048237
      WBInteraction000049023
      WBInteraction000106092
      WBInteraction000110129
      WBInteraction000115812
      WBInteraction000118255
      WBInteraction000118279
      WBInteraction000118627
      WBInteraction000119917
      WBInteraction000120152
      WBInteraction000121158
      WBInteraction000121948
      WBInteraction000122086
      WBInteraction000124659
      WBInteraction000125350
      WBInteraction000126041
      WBInteraction000127396
      WBInteraction000127604
      WBInteraction000133423
      WBInteraction000133841
      WBInteraction000136285
      WBInteraction000136578
      WBInteraction000136764
      WBInteraction000137049
      WBInteraction000138313
      WBInteraction000138763
      WBInteraction000142130
      WBInteraction000142995
      WBInteraction000144864
      WBInteraction000145636
      WBInteraction000148370
      WBInteraction000148471
      WBInteraction000148689
      WBInteraction000148954
      WBInteraction000151235
      WBInteraction000151621
      WBInteraction000151925
      WBInteraction000152320
      WBInteraction000159977
      WBInteraction000161420
      WBInteraction000164772
      WBInteraction000164929
      WBInteraction000171057
      WBInteraction000172587
      WBInteraction000172793
      WBInteraction000174993
      WBInteraction000175152
      WBInteraction000175590
      WBInteraction000176773
      WBInteraction000177450
      WBInteraction000179403
      WBInteraction000184082
      WBInteraction000184252
      WBInteraction000185421
      WBInteraction000185981
      WBInteraction000186143
      WBInteraction000186438
      WBInteraction000186972
      WBInteraction000187502
      WBInteraction000187742
      WBInteraction000187909
      WBInteraction000188813
      WBInteraction000192075
      WBInteraction000193838
      WBInteraction000193979
      WBInteraction000195004
      WBInteraction000195382
      WBInteraction000197394
      WBInteraction000200471
      WBInteraction000201539
      WBInteraction000203335
      WBInteraction000205592
      WBInteraction000210142
      WBInteraction000213980
      WBInteraction000214617
      WBInteraction000215536
      WBInteraction000215603
      WBInteraction000216559
      WBInteraction000217835
      WBInteraction000219631
      WBInteraction000220489
      WBInteraction000221263
      WBInteraction000221574
      WBInteraction000224253
      WBInteraction000224863
      WBInteraction000226991
      WBInteraction000229833
      WBInteraction000231480
      WBInteraction000232973
      WBInteraction000235495
      WBInteraction000236111
      WBInteraction000237679
      WBInteraction000237981
      WBInteraction000243445
      WBInteraction000243659
      WBInteraction000243724
      WBInteraction000244069
      WBInteraction000245634
      WBInteraction000245916
      WBInteraction000248667
      WBInteraction000249946
      WBInteraction000252617
      WBInteraction000252940
      WBInteraction000257656
      WBInteraction000258855
      WBInteraction000260543
      WBInteraction000274291
      WBInteraction000274563
      WBInteraction000277600
      WBInteraction000278380
      WBInteraction000278945
      WBInteraction000280981
      WBInteraction000283210
      WBInteraction000283253
      WBInteraction000284712
      WBInteraction000287698
      WBInteraction000287699
      WBInteraction000291509
      WBInteraction000292725
      WBInteraction000292988
      WBInteraction000301481
      WBInteraction000305295
      WBInteraction000307064
      WBInteraction000307323
      WBInteraction000309351
      WBInteraction000310019
      WBInteraction000310057
      WBInteraction000311726
      WBInteraction000313614
      WBInteraction000316149
      WBInteraction000316204
      WBInteraction000316206
      WBInteraction000322931
      WBInteraction000323524
      WBInteraction000324258
      WBInteraction000329837
      WBInteraction000332926
      WBInteraction000336770
      WBInteraction000337910
      WBInteraction000338764
      WBInteraction000348313
      WBInteraction000352304
      WBInteraction000357221
      WBInteraction000365992
      WBInteraction000370503
      WBInteraction000371360
      WBInteraction000372525
      WBInteraction000372755
      WBInteraction000376526
      WBInteraction000377444
      WBInteraction000385831
      WBInteraction000389526
      WBInteraction000392998
      WBInteraction000396558
      WBInteraction000396968
      WBInteraction000403699
      WBInteraction000406886
      WBInteraction000416655
      WBInteraction000418085
      WBInteraction000419368
      WBInteraction000421079
      WBInteraction000421629
      WBInteraction000424938
      WBInteraction000433000
      WBInteraction000433456
      WBInteraction000436773
      WBInteraction000436947
      WBInteraction000437199
      WBInteraction000440499
      WBInteraction000445969
      WBInteraction000449387
      WBInteraction000454569
      WBInteraction000463587
      WBInteraction000464288
      WBInteraction000464725
      WBInteraction000465124
      WBInteraction000465266
      WBInteraction000465869
      WBInteraction000465980
      WBInteraction000466229
      WBInteraction000467086
      WBInteraction000467345
      WBInteraction000467600
      WBInteraction000467938
      WBInteraction000469135
      WBInteraction000470553
      WBInteraction000470554
      WBInteraction000470767
      WBInteraction000470818
      WBInteraction000471720
      WBInteraction000471964
      WBInteraction000472350
      WBInteraction000472463
      WBInteraction000472588
      WBInteraction000473056
      WBInteraction000475100
      WBInteraction000475207
      WBInteraction000563508
      WBInteraction000564093
      WBInteraction000567820
      WBInteraction000569116
      WBInteraction000570457
      WBInteraction000584675
  Map_info: Map: I Position: 2.78304 Error: 0.004428
    Positive: Positive_clone: T19A6 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00034327
    WBPaper00038491
    WBPaper00046133
    WBPaper00055090
    WBPaper00064339
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene