WormBase Tree Display for Gene: WBGene00006065

WBGene00006065 SMap: S_parent: Sequence: F52D10
  Identity: Version: 1
    Name: CGC_name: sto-3 Person_evidence: WBPerson247
      Sequence_name: F52D10.5
      Molecular_name: F52D10.5
        F52D10.5.1
        CE03391
      Other_name: CELE_F52D10.5 Accession_evidence: NDB BX284606
      Public_name: sto-3
    DB_info: Database: AceView gene XM238
        WormQTL gene WBGene00006065
        WormFlux gene WBGene00006065
        NDB locus_tag CELE_F52D10.5
        Panther gene CAEEL|WormBase=WBGene00006065|UniProtKB=Q20657
          family PTHR10264
        NCBI gene 191966
        RefSeq protein NM_077540.2
        SwissProt UniProtAcc Q20657
        UniProt_GCRP UniProtAcc Q20657
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:39 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sto
    Allele (42)
    Legacy_information: [Barnes TM] sto for STOmatin family. Predicted gene F52D10.5
    RNASeq_FPKM (74)
    GO_annotation: 00068718
      00068719
      00068720
      00113940
      00113941
    Ortholog (24)
    Paralog: WBGene00003166 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006063 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006064 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006761 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006741 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006068 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006066 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00006067 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006061 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to be located in plasma membrane. Expressed in RIB; ray neuron type B; and tail. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F52D10.5
    Corresponding_transcript: F52D10.5.1
    Other_sequence: BXC02315_1
  Experimental_info: RNAi_result: WBRNAi00015398 Inferred_automatically: RNAi_primary
      WBRNAi00032608 Inferred_automatically: RNAi_primary
      WBRNAi00047965 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr12806
      Expr14281
      Expr1023509
      Expr1151784
      Expr2016971
      Expr2035119
    Drives_construct: WBCnstr00018493
      WBCnstr00019943
      WBCnstr00019944
      WBCnstr00022785
      WBCnstr00034563
      WBCnstr00040699
    Construct_product: WBCnstr00034563
    Microarray_results: SMD_F52D10.5
      193183_at
      A_12_P119509
      Aff_F52D10.5
      GPL13394_WBGene00006065
      GPL13914_F52D10.5
      GPL14144_F52D10.5_419-478_0.931_5_C
      GPL14144_F52D10.5_538-597_0.936_3_B
      GPL14144_F52D10.5_699-758_0.957_1_A
      GPL19516_CGZ0023103
      GPL21109_F52D10.5
      GPL3518_CE03391
      GPL8304_CE_WBGene00006065_A
      GPL8673_F52D10_5P00329
      GPL8673_F52D10_5P00514
      GPL8673_F52D10_5P00714
      GPL9450_F52D10.5
      cea2.i.54297
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_embryo_enriched
      WBPaper00037950:pharyngeal-muscle_embryo_SelectivelyEnriched
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
      WBPaper00041370:spg-7(RNAi)_upregulated_atfs-1_dependent
      WBPaper00042194:nhr-114(RNAi)_downregulated
      WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
      WBPaper00044316:CH3HgCl_7.5uM_upregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00048923:Aging_regulated
      WBPaper00048988:daf-2(e1370)_daf-16(mu86)_downregulated_neuron
      WBPaper00048988:daf-2(e1370)_downregulated_neuron
      WBPaper00048988:neuron_expressed
      WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00053402:cco-1(RNAi)_upregulated
      WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
      WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00056809:smn-1(ok355)_upregulated
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061274:hypergravity_15xg_upregulated
      WBPaper00061340:ADF
      WBPaper00061340:AVB
      WBPaper00061340:RIB
      WBPaper00061340:Y
      WBPaper00061527:fbxa-154_11499-Y44A6D.1
      WBPaper00061530:nhr-49(e2144)_downregulated
      WBPaper00061651:RIB_enriched
      WBPaper00062103:neuron_enriched
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065315:mating_downregulated_Day2-7
      WBPaper00065841:97_0
      WBPaper00065841:110_1
      WBPaper00065841:121_0
      WBPaper00065841:128_0
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00036123:Atrazine_regulated
      WBPaper00041370:spg-7(RNAi)_upregulated
      WBPaper00049336:aptf-1(gk794)_downregulated_3-fold-embryo
      WBPaper00056330:mrps-5(RNAi)_upregulated
    Interaction: WBInteraction000178470
      WBInteraction000184473
      WBInteraction000188998
      WBInteraction000192396
      WBInteraction000194557
      WBInteraction000195677
      WBInteraction000209943
      WBInteraction000219542
      WBInteraction000237940
      WBInteraction000241643
      WBInteraction000258895
      WBInteraction000259675
      WBInteraction000260255
      WBInteraction000279882
      WBInteraction000281188
      WBInteraction000283940
      WBInteraction000288762
      WBInteraction000290529
      WBInteraction000292002
      WBInteraction000299530
      WBInteraction000303070
      WBInteraction000305109
      WBInteraction000306496
      WBInteraction000308306
      WBInteraction000317466
      WBInteraction000318085
      WBInteraction000335706
      WBInteraction000347289
      WBInteraction000349983
      WBInteraction000350002
      WBInteraction000351877
      WBInteraction000357346
      WBInteraction000361366
      WBInteraction000375166
      WBInteraction000378219
      WBInteraction000379375
      WBInteraction000382951
      WBInteraction000396351
      WBInteraction000399208
      WBInteraction000403927
      WBInteraction000404071
      WBInteraction000406417
      WBInteraction000410596
      WBInteraction000428027
      WBInteraction000434894
      WBInteraction000436049
      WBInteraction000443195
      WBInteraction000450979
      WBInteraction000453720
      WBInteraction000454779
      WBInteraction000462199
      WBInteraction000474706
  Map_info: Map: X Position: 5.10639 Error: 0.049781
    Positive: Positive_clone: F52D10 Person_evidence: WBPerson43
          Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00030154
    WBPaper00038491
    WBPaper00055090
    WBPaper00056324
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene