WormBase Tree Display for Gene: WBGene00006654
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| WBGene00006654 | SMap | S_parent | Sequence | C40H5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ttx-3 | Person_evidence | WBPerson1417 | |||||
| Sequence_name | C40H5.5 | ||||||||
| Molecular_name | C40H5.5a | ||||||||
| C40H5.5a.1 | |||||||||
| CE27107 | |||||||||
| C40H5.5b | |||||||||
| CE43132 | |||||||||
| C40H5.5b.1 | |||||||||
| Other_name | CELE_C40H5.5 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | ttx-3 | ||||||||
| DB_info | Database | AceView | gene | XM384 | |||||
| WormQTL | gene | WBGene00006654 | |||||||
| WormFlux | gene | WBGene00006654 | |||||||
| NDB | locus_tag | CELE_C40H5.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006654|UniProtKB=G5EE86 | |||||||
| family | PTHR24208 | ||||||||
| NCBI | gene | 181357 | |||||||
| RefSeq | protein | NM_001270239.2 | |||||||
| NM_001270240.3 | |||||||||
| SwissProt | UniProtAcc | G5EE86 | |||||||
| UniProt_GCRP | UniProtAcc | G5EE86 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ttx | ||||||||
| Allele (84) | |||||||||
| Legacy_information | [Mori I] ks5 cryophilic, almost completely defective in isothermal tracking. No obvious abnormalities in chemotaxis to NaCl, osmotic avoidance, male mating, or dauer formation. | ||||||||
| [C.elegansII] ks5 : mutant animals cryophilic, almost completely defective in isothermal tracking. No obvious abnormalities in chemotaxis to NaCl, osmotic avoidance, male mating, or dauer formation. [FK] | |||||||||
| [Hobert O] LIM homeobox gene | |||||||||
| Complementation_data | [Mori I] ks5 complements ttx-1(p767) | ||||||||
| Strain (29) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (53) | |||||||||
| Ortholog (41) | |||||||||
| Paralog | WBGene00000438 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00002987 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00002988 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00002989 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00003000 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003167 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006824 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00015216 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00017644 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00022518 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | ttx-3 encodes a LIM homeodomain protein required for functions of the interneuron AIY, including thermosensory behavior and olfactory learning. | Paper_evidence | WBPaper00004727 | |||||
| WBPaper00026662 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 06 Jan 2006 00:00:00 | ||||||||
| Automated_description | Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including olfactory learning; regulation of developmental process; and response to temperature stimulus. Predicted to be located in nucleus. Expressed in head muscle; head neurons; and pharyngeal neurons. Is an ortholog of human LHX9 (LIM homeobox 9). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C40H5.5a | |||||||
| C40H5.5b | |||||||||
| Corresponding_CDS_history | C40H5.5:wp47 | ||||||||
| Corresponding_transcript | C40H5.5a.1 | ||||||||
| C40H5.5b.1 | |||||||||
| Other_sequence | U72211 | ||||||||
| JI479595.1 | |||||||||
| Acan_isotig13660 | |||||||||
| JI171393.1 | |||||||||
| Dviv_isotig25707 | |||||||||
| Associated_feature (20) | |||||||||
| Gene_product_binds | WBsf945408 | ||||||||
| WBsf945409 | |||||||||
| WBsf945410 | |||||||||
| Transcription_factor | WBTranscriptionFactor000033 | ||||||||
| WBTranscriptionFactor000440 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00011825 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00042268 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00067793 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00064325 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (15) | |||||||||
| Drives_construct (89) | |||||||||
| Construct_product | WBCnstr00001585 | ||||||||
| WBCnstr00006651 | |||||||||
| WBCnstr00006653 | |||||||||
| WBCnstr00006654 | |||||||||
| WBCnstr00006868 | |||||||||
| WBCnstr00006870 | |||||||||
| WBCnstr00006871 | |||||||||
| WBCnstr00010292 | |||||||||
| WBCnstr00015399 | |||||||||
| WBCnstr00015883 | |||||||||
| WBCnstr00016867 | |||||||||
| WBCnstr00034238 | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (112) | |||||||||
| Interaction (127) | |||||||||
| Anatomy_function | WBbtf0150 | ||||||||
| Map_info | Map | X | Position | 6.71664 | Error | 0.04133 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | C40H5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 3097 | |||||||
| 4411 | |||||||||
| 4875 | |||||||||
| 5571 | |||||||||
| Pos_neg_data | 8349 | ||||||||
| 8350 | |||||||||
| Reference (157) | |||||||||
| Method | Gene |
