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WormBase Tree Display for Gene: WBGene00012546

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Name Class

WBGene00012546SMapS_parentSequenceY37D8A
IdentityVersion1
NameSequence_nameY37D8A.4
Molecular_nameY37D8A.4
Y37D8A.4.1
CE20209
Other_nameCELE_Y37D8A.4Accession_evidenceNDBBX284603
Public_nameY37D8A.4
DB_infoDatabaseAceViewgene3N928
WormQTLgeneWBGene00012546
SignaLinkproteinWBGene00012546
WormFluxgeneWBGene00012546
NDBlocus_tagCELE_Y37D8A.4
NCBIgene176699
RefSeqproteinNM_067269.5
TREEFAMTREEFAM_IDTF317138
TrEMBLUniProtAccQ9XWW5
UniProt_GCRPUniProtAccQ9XWW5
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:53WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (38)
RNASeq_FPKM (74)
Ortholog (21)
Structured_descriptionAutomated_descriptionEnriched in several structures, including AFD; germ line; germline precursor cell; intestine; and lateral ganglion based on RNA-seq; single-cell RNA-seq; proteomic; and microarray studies. Is affected by several genes including daf-16; daf-12; and hsf-1 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by thirteen chemicals including Heme; rotenone; and Cry5B based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: SH2 domain superfamily and SH2 domain.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY37D8A.4
Corresponding_transcriptY37D8A.4.1
Other_sequenceCJC17159_1
CBC06489_1
Associated_featureWBsf651555
WBsf717117
WBsf718007
WBsf981631
WBsf994731
WBsf994732
WBsf994733
WBsf994734
WBsf1016260
WBsf1016261
WBsf1016262
WBsf227688
Experimental_infoRNAi_resultWBRNAi00020218Inferred_automaticallyRNAi_primary
WBRNAi00055886Inferred_automaticallyRNAi_primary
WBRNAi00036790Inferred_automaticallyRNAi_primary
WBRNAi00006413Inferred_automaticallyRNAi_primary
WBRNAi00000558Inferred_automaticallyRNAi_primary
Expr_patternExpr1024334
Expr1035551
Expr1159411
Expr2007246
Expr2025477
Drives_constructWBCnstr00029912
Construct_productWBCnstr00029912
Microarray_results (20)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00032031:DConiospora_upregulated_cDNA_12h
WBPaper00032425:down_in_rde-4
WBPaper00032425:down_in_zfp-1
WBPaper00036738:4uM_Heme_downregulated
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00040221:DAF-12_target_ALF4
WBPaper00040221:DAF-12_target_ALF9
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00045521:Oogenic
WBPaper00045729:gld-2(RNAi)_downregulated
WBPaper00045774:clk-1_upregulated
WBPaper00045934:wrn-1(gk99)_upregulated
WBPaper00048971:daf-16(mgDf50)_upregulated_L1
WBPaper00048988:neuron_expressed
WBPaper00049217:DAF-16_downregulated
WBPaper00049498:npr-1(ur89)_regulated_3
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050468:hlh-30-dependent_Cry5B_regulated
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00051039:germline_enriched
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053295:lin-22(ot269)_upregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053321:embryo-to-L1_downregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
WBPaper00053321:PGCs_enriched_NuGen
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053599:female_vs_male_upregulated
WBPaper00053599:mitosis_vs_meiosis_downregulated
WBPaper00053599:oocyte_vs_mitosis_downregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055648:germline_expressed
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056139:soil-microbiota_downregulated
WBPaper00056161:hermaphrodite_enriched_siRNA
WBPaper00056284:ints-5(RNAi)_downregulated
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056290:mdt-15(mg584)_upregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056826:SGP_biased
WBPaper00057006:DietaryRestriction_downregulated
WBPaper00057288:Cold_downregulated_transcript
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058598:sin-3(tm1276)_upregulated
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059471:EGL-43_interacting
WBPaper00059664:srbc-48(ac23)_downregulated
WBPaper00059763:neuron_expressed
WBPaper00060014:set-2(zr2012)_downregulated
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060764:swsn-1(os22ts)_downregulated
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00061007:HB101_downregulated
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061203:sin-3(tm1276)_downregulated
WBPaper00061203:spr-1(ok2144)_downregulated
WBPaper00061340:AIB
WBPaper00061340:AWC
WBPaper00061390:N2_ascarosides_upregulated
WBPaper00061527:dpy-26-B0205.1
WBPaper00061527:ZK1053.4-C08F1.6
WBPaper00061699:daf-18(ok480)_upregulated
WBPaper00061818:AFD_enriched_protein
WBPaper00061818:ELKS-1_interacting
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062456:doxycycline_downregulated_CB4856_transcript
WBPaper00062456:doxycycline_downregulated_N2_transcript
WBPaper00062590:Aging_downregulated_hypodermis
WBPaper00062672:let-418(n3536)_downregulated
WBPaper00064107:lin-35(n745)_upregulated
WBPaper00064716:paraquat_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065841:57_1
WBPaper00065975:P-body_vs_oocyte_enriched
WBPaper00065975:P-body_vs_WholeAnimal_enriched
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066085:sin-3(syb2172)_upregulated
WBPaper00066110:tetraploid_vs_diploid_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4386_cluster_4_3
WBPaper00024671:AFD_AWB_vs_unsorted_downregulated
WBPaper00025032:cluster_89
WBPaper00025032:cluster_124
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00030839:Larval_Pan_Neuronal
WBPaper00031003:0hr_muscle_depleted
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00031532:Larva_Pan_Neuronal_Enriched
WBPaper00031703:heme_responsive_4
WBPaper00031832:slr-2_regulated
WBPaper00035084:L1_enriched_AIN-2_IP
WBPaper00036286:Pattern_F
WBPaper00037611:RNP-8-associated
WBPaper00037695:LD_3-day
WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_juvenile
WBPaper00040858:eQTL_regulated_old
WBPaper00041002:HF_3d_2.0mM_Down
WBPaper00041370:spg-7(RNAi)_upregulated
WBPaper00041606:CE_B.thuringiensis-DB27_regulated
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_UVC-EtBr-exposed_3h
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00045263:isp-1(qm150)_upregulated
WBPaper00045263:nuo-6(qm200)_upregulated
WBPaper00045263:ProLongevity-mtROS_upregulated
WBPaper00047070:N2_starvation_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00051448:P.aeruginosa_Liquid-Killing_upregulated
WBPaper00053236:daf-16(mgDF50)_regulated_Starved
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
WBPaper00053827:pyoverdine_upregulated
[cgc5767]:expression_class_E
[cgc5767]:expression_class_ET
[cgc5767]:expression_class_ET_max(83_min)
[cgc5767]:expression_class_E_pi(101_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc5767]:expression_class_MET
Interaction (26)
Map_infoPositivePositive_cloneY37D8AInferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIII19.0655
ReferenceWBPaper00064325
MethodGene