WormBase Tree Display for Gene: WBGene00002980

WBGene00002980 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: C32D5
  Identity: Version: 2
    Name: CGC_name: lgg-1 Person_evidence: WBPerson321
      Sequence_name: C32D5.9
      Molecular_name: C32D5.9
        C32D5.9.1
        CE01849
      Other_name: 2G636 Accession_evidence: EMBL AF326943
        atg-8.1 Person_evidence: WBPerson649
        CELE_C32D5.9 Accession_evidence: NDB BX284602
      Public_name: lgg-1
    DB_info: Database: AceView gene 2G636
        WormQTL gene WBGene00002980
        WormFlux gene WBGene00002980
        NDB locus_tag CELE_C32D5.9
        Panther gene CAEEL|WormBase=WBGene00002980|UniProtKB=Q09490
          family PTHR10969
        NCBI gene 174050
        RefSeq protein NM_062876.8
        SwissProt UniProtAcc Q09490
        TREEFAM TREEFAM_ID TF314556
        UniProt_GCRP UniProtAcc Q09490
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:30 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 29 Feb 2008 11:29:00 WBPerson2970 Name_change: Other_name: atg-8.1
    Status: Live
  Gene_info (11)
  Modifies_disease: DOID:332
  Modifies_disease_in_annotation: WBDOannot00001227
  Molecular_info: Corresponding_CDS: C32D5.9
    Corresponding_transcript: C32D5.9.1
    Other_sequence: EX552095.1
      PTC00017_1
      MIC07072_1
      ES568585.1
      EY458361.1
      SR04625
      AYC00748_1
      GO249943.1
      SR04527
      XIC05001_1
      GO249835.1
      FC809814.1
      AE01025
      Oden_isotig25984
      GP02812
      Tcol_isotig17620
      SR04362
      CR02926
      SR04698
      FC818405.1
      ACC21857_1
      PPC05981_1
      LSC00376_1
      SRC00164_1
      SR04707
      XI00821
      EY467431.1
      PPC00318_1
      SSC00192_1
      GR13694
      EX015152.1
      MAC01076_1
      EX558759.1
      CR02461
      EX912055.1
      NAC01941_1
      SRC00571_1
      NB12619
      CRC00821_1
      GRC00798_1
      FC812737.1
      NBC09588_1
      PT00019
      NB06890
      MI09161
      ACC17274_1
      SR04843
      MCC01917_1
      CB037451.1
      SR00369
      CBC00885_1
      SR04615
      TDC01450_1
      Acan_isotig06536
      HCC06213_1
      Tcol_isotig11667
      CJC01557_1
      PT00024
      GPC01335_1
      XIC01049_1
      GO249972.1
      JI477962.1
      JI173194.1
      FG347307.1
      Oden_isotig18063
      PTC03638_1
      Name_isotig07091
      NBC06270_1
      TSC01571_1
      ACC01177_1
      AYC01236_1
      EX913426.1
      ES741567.1
      CRC08112_1
      SR05220
      HC04830
      FC811920.1
      CR02638
      ES739119.1
      CJC18415_1
      EX011654.1
      BG661383.1
      JI469578.1
      GP00078
      ASC38728_1
      XIC02261_1
      ES413690.1
      EY471473.1
      RSC00062_1
      SR00909
      SR01101
      FC817228.1
      HBC01043_1
      MH10839
      ACC01905_1
      HGC02423_1
      AE01445
      GO249254.1
      FG582043.1
      EY464737.1
      GR11811
      HGC06083_1
      XI02948
      BE240833.1
      CJC00085_1
      Dviv_isotig14913
      OOC03870_1
      EX561734.1
      BU088191.1
      Hbac_isotig00574
      SR04604
      PTC00219_1
      SRC06517_1
      Acan_isotig07026
      Tcir_isotig27360
      MI03472
      NBC00020_1
      FC811660.1
      SS01532
      MHC08966_1
      GO249004.1
      SR01099
      GO249399.1
      AM743527.1
      NB07198
      FK804313.1
      FC810991.1
      ES741672.1
      PP00628
      FG580346.1
      HG11685
      MA01763
      TS00441
      BU087855.1
      FC820918.1
      HG12023
      FC816396.1
      Dviv_isotig14912
      GO249188.1
      SR02944
      SR00853
      EX557066.1
      Tcol_isotig11666
      FK803283.1
      NB07703
      BU088292.1
      HG03477
      PT00639
      TS01732
      GP02456
      PT03934
      XI04652
      CJC07317_1
      FE908995.1
      Tcir_isotig09836
      FC811908.1
      EY471791.1
      FG619418.1
      HC01977
      DN557040.1
      BXC00896_1
      FC821547.1
      FC813879.1
      EX502152.1
      MC03250
      XI04492
      CRC08668_1
      Acan_isotig06537
      GP00291
      FC817071.1
      HGC00128_1
      CR10130
      FC817501.1
      EX915604.1
      MI07785
      EX560203.1
      NB08714
      HCC05564_1
      SR05025
      Hbac_isotig00573
      MIC02989_1
    Associated_feature: WBsf650133
      WBsf650134
      WBsf665243
      WBsf665602
      WBsf976441
      WBsf976442
      WBsf976443
      WBsf981208
      WBsf988140
      WBsf1012365
      WBsf223160
  Experimental_info: RNAi_result (59)
    Expr_pattern (17)
    Drives_construct (18)
    Construct_product: WBCnstr00000015
      WBCnstr00000166
      WBCnstr00000249
      WBCnstr00000578
      WBCnstr00004948
      WBCnstr00007704
      WBCnstr00008071
      WBCnstr00008240
      WBCnstr00009224
      WBCnstr00009225
      WBCnstr00010906
      WBCnstr00012079
      WBCnstr00014060
      WBCnstr00015786
      WBCnstr00015976
      WBCnstr00016647
      WBCnstr00016649
      WBCnstr00018611
      WBCnstr00019119
      WBCnstr00019680
      WBCnstr00020398
      WBCnstr00021649
      WBCnstr00021650
      WBCnstr00021653
      WBCnstr00021654
      WBCnstr00021655
      WBCnstr00021656
      WBCnstr00023120
      WBCnstr00023123
      WBCnstr00036309
      WBCnstr00039395
      WBCnstr00041715
      WBCnstr00041716
      WBCnstr00041794
      WBCnstr00042007
      WBCnstr00042010
      WBCnstr00042191
    Antibody: WBAntibody00002128
      WBAntibody00002775
      WBAntibody00002776
      WBAntibody00002864
      WBAntibody00002888
      WBAntibody00002907
      WBAntibody00003022
    Microarray_results (18)
    Expression_cluster: WBPaper00032097:CGH-1-associated-mRNA
      WBPaper00032528:L3_enriched
      WBPaper00033065:isp-1-1(qm150)_upregulated
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00038118:aak-2(gt33)_upregulated
      WBPaper00038118:stress_upregulated_N2
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00045050:csr-1(hypomorph)_downregulated
      WBPaper00045314:S.aureus-induced_N2
      WBPaper00045521:Oogenic
      WBPaper00045774:clk-1_upregulated
      WBPaper00045974:NSM_enriched_totalRNA_RNAseq
      WBPaper00046024:sleep_upregulated_oscillating
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
      WBPaper00046497:B.thuringiensis_upregulated_protein
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:cco-1(RNAi)_upregulated
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050199:hsf-1(ok600)_upregulated
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050448:KGB-1-induced
      WBPaper00050468:hlh-30-dependent_Cry5B_regulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050514:CEBP-1_interacting
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051257:Levamisole_upregulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053023:nlg-1(ok259)_downregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053295:lin-22(ot267)_downregulated
      WBPaper00053295:lin-22(ot269)_downregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_24h_regulated
      WBPaper00053388:dauer_regulated_Cluster4
      WBPaper00053713:Pheromone-induced_postdauer_vs_control_downregulated
      WBPaper00053713:Starvation-induced_postdauer_vs_control_upregulated
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055049:S.gordonii_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00055969:electromagnetic-field_upregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056139:soil-microbiota_upregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00057068:Cadmium_upregulated
      WBPaper00057288:Cold_downregulated_protein
      WBPaper00057288:iff-1(RNAi)_upregulated_protein
      WBPaper00058948:PA14_downregulated
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059471:EGL-43_interacting
      WBPaper00059763:neuron_expressed
      WBPaper00059824:rnp-6(dh1127)_regulated_OP50
      WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
      WBPaper00059895:wounding_upregulated
      WBPaper00059987:Wounding_upregulated
      WBPaper00060014:set-2(zr2012)_upregulated
      WBPaper00060084:cco-1(RNAi)_upregulated_N2
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061527:chd-7_16664-jmjd-3.1
      WBPaper00061651:AIZ_enriched
      WBPaper00061651:AVG_enriched
      WBPaper00061651:PDE_enriched
      WBPaper00061651:VB01_enriched
      WBPaper00061651:VB02_enriched
      WBPaper00061651:VB_enriched
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062354:H.zoospora_6h_regulated
      WBPaper00062440:crh-1(n3315)_downregulated
      WBPaper00062456:doxycycline_downregulated_CB4856_protein
      WBPaper00064055:trl-1(cas1077)_downregulated_non-starved
      WBPaper00064055:trl-1(cas1077)_downregulated_starved
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
      WBPaper00064532:pals-25(icb98)_upregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00064735:bet-1(RNAi)_vs_N2_upregulated
      WBPaper00064871:hypoxia_downregulated_F1
      WBPaper00065086:JU1400_N.ferruginous_regulated
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065258:anchor-cell_enriched
      WBPaper00065945:epidermis-rpoa-2(-)_downregulated_transcript
      WBPaper00065995:M.humicola-extract_downregulated_N2
      WBPaper00066062:xrep-4(lax137)_upregulated
      cgc4386_cluster_4_3
      cgc4489_group_9
      WBPaper00025032:cluster_45
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00030839:Larval_Pan_Neuronal
      WBPaper00030985:Enterococcus_faecalis_upregulated
      WBPaper00030985:Photorhabdus_luminescens_upregulated
      WBPaper00030985:Serratia_marcesens_downregulated
      WBPaper00032948:StarveUp2
      WBPaper00034739:N2moreDR1350
      WBPaper00034757:up_by_oxidative_stress
      WBPaper00035227:heat_shock_regulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00036123:Atrazine_regulated
      WBPaper00036286:Pattern_F
      WBPaper00037901:GLD-1_mRNA_targets
      WBPaper00038231:Cry5B_1.5-fold_upregulated
      WBPaper00038231:Cry5B_2-fold_upregulated
      WBPaper00040184:hcf-1up_sir-2.1up_daf-2up
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00040858:eQTL_regulated_old
      WBPaper00041370:spg-7(RNAi)_upregulated
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00042178:hlh-29(tm284)_upregulated
      WBPaper00044091:Bpseudomallei_induced_2h
      WBPaper00045015:nhr-25(RNAi)_upregulated
      WBPaper00045960:L1-L4-lethargus_upregulated
      WBPaper00045960:L4-lethargus_upregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(83_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
      [cgc6390]:Cluster_A
    Interaction (287)
    WBProcess: WBbiopr:00000003
  Map_info: Map: II Position: -0.380826 Error: 0.000183
    Positive: Positive_clone: C32D5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (176)
  Remark: Sequence connection from [Kimura Y]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene