WormBase Tree Display for Gene: WBGene00010877
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| WBGene00010877 | SMap | S_parent | Sequence | M05D6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | lact-4 | Person_evidence | WBPerson168 | |||||
| Sequence_name | M05D6.4 | ||||||||
| Molecular_name | M05D6.4 | ||||||||
| M05D6.4.1 | |||||||||
| CE03502 | |||||||||
| Other_name | CELE_M05D6.4 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | lact-4 | ||||||||
| DB_info | Database (10) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 13 Apr 2007 16:02:30 | WBPerson2970 | Name_change | CGC_name | lact-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lact | ||||||||
| Allele | WBVar01499702 | ||||||||
| WBVar00052272 | |||||||||
| WBVar01498435 | |||||||||
| WBVar00372208 | |||||||||
| WBVar00372209 | |||||||||
| WBVar01242356 | |||||||||
| WBVar01949217 | |||||||||
| WBVar01538343 | |||||||||
| WBVar01538344 | |||||||||
| WBVar01405370 | |||||||||
| WBVar00094122 | |||||||||
| WBVar01695827 | |||||||||
| WBVar01499423 | |||||||||
| WBVar02092171 | |||||||||
| WBVar02089229 | |||||||||
| WBVar02029233 | |||||||||
| WBVar01604320 | |||||||||
| WBVar01400212 | |||||||||
| WBVar01836125 | |||||||||
| WBVar00750421 | |||||||||
| WBVar01784200 | |||||||||
| WBVar00750422 | |||||||||
| WBVar00750423 | |||||||||
| WBVar00750424 | |||||||||
| WBVar00750425 | |||||||||
| WBVar00750426 | |||||||||
| WBVar00750427 | |||||||||
| WBVar00750428 | |||||||||
| WBVar00750429 | |||||||||
| WBVar00750430 | |||||||||
| WBVar00750431 | |||||||||
| WBVar00750432 | |||||||||
| WBVar00750433 | |||||||||
| WBVar00750434 | |||||||||
| WBVar00750435 | |||||||||
| WBVar00750436 | |||||||||
| WBVar00226312 | |||||||||
| WBVar00264951 | |||||||||
| WBVar01498940 | |||||||||
| WBVar00174015 | |||||||||
| WBVar00174017 | |||||||||
| WBVar00174018 | |||||||||
| WBVar02130366 | |||||||||
| Strain | WBStrain00032924 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOP2352 | ||||||||
| Ortholog (23) | |||||||||
| Paralog | WBGene00007358 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00018523 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00014164 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00016355 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00010897 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000767 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00008410 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00021315 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | lact-4 encodes a beta-lactamase domain-containing protein that contains predicted signal and transmembrane sequences in its N terminus. | Curator_confirmed | WBPerson1843 | |||||
| Date_last_updated | 18 Dec 2007 00:00:00 | ||||||||
| Automated_description | Enriched in several structures, including ABalppppppa; ABpraaapppa; coelomocyte; muscle cell; and neurons based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by eighteen chemicals including Tunicamycin; mianserin; and D-glucose based on microarray; RNA-seq; and proteomic studies. Is predicted to encode a protein with the following domains: Beta-lactamase-related; Beta-lactamase; and Beta-lactamase/transpeptidase-like. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | M05D6.4 | |||||||
| Corresponding_transcript | M05D6.4.1 | ||||||||
| Other_sequence (32) | |||||||||
| Associated_feature | WBsf223503 | ||||||||
| WBsf223504 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00034439 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00017193 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00089125 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00050933 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1012942 | ||||||||
| Expr1034769 | |||||||||
| Expr1154631 | |||||||||
| Expr2012996 | |||||||||
| Expr2031228 | |||||||||
| Drives_construct | WBCnstr00031088 | ||||||||
| Construct_product | WBCnstr00031088 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (197) | |||||||||
| Interaction (44) | |||||||||
| Map_info | Map | II | Position | 0.813482 | Error | 0.000327 | |||
| Positive | Positive_clone | M05D6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00061938 | ||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
