WormBase Tree Display for Gene: WBGene00001990
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| WBGene00001990 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | K07A12 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | hot-5 | Person_evidence | WBPerson42 | |||||
| Sequence_name | K07A12.6 | ||||||||
| Molecular_name | K07A12.6 | ||||||||
| K07A12.6.1 | |||||||||
| CE11874 | |||||||||
| Other_name | CELE_K07A12.6 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | hot-5 | ||||||||
| DB_info | Database (10) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hot | ||||||||
| Allele | WBVar01499340 | ||||||||
| WBVar01499341 | |||||||||
| WBVar00656560 | |||||||||
| WBVar00656561 | |||||||||
| WBVar00656562 | |||||||||
| WBVar01500105 | |||||||||
| WBVar00340561 | |||||||||
| WBVar00656563 | |||||||||
| WBVar00340562 | |||||||||
| WBVar01499739 | |||||||||
| WBVar00340563 | |||||||||
| WBVar00656564 | |||||||||
| WBVar00340564 | |||||||||
| WBVar00656565 | |||||||||
| WBVar00340565 | |||||||||
| WBVar00656566 | |||||||||
| WBVar00656567 | |||||||||
| WBVar00340566 | |||||||||
| WBVar00656568 | |||||||||
| WBVar00656569 | |||||||||
| WBVar00656570 | |||||||||
| WBVar00656571 | |||||||||
| WBVar00656572 | |||||||||
| WBVar00656573 | |||||||||
| WBVar00656574 | |||||||||
| WBVar00656575 | |||||||||
| WBVar00155271 | |||||||||
| WBVar00155272 | |||||||||
| WBVar00155273 | |||||||||
| WBVar00155274 | |||||||||
| WBVar00155275 | |||||||||
| WBVar00155276 | |||||||||
| WBVar01957396 | |||||||||
| WBVar01499786 | |||||||||
| WBVar01499054 | |||||||||
| WBVar01283605 | |||||||||
| WBVar02128079 | |||||||||
| WBVar01421322 | |||||||||
| WBVar01641106 | |||||||||
| WBVar00538095 | |||||||||
| WBVar01498959 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00013512 | ||||||||
| 00013513 | |||||||||
| 00013514 | |||||||||
| 00013515 | |||||||||
| Ortholog (23) | |||||||||
| Paralog | WBGene00001986 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WBGene00001987 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00001988 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00001989 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00003849 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00020489 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00044484 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| Structured_description | Concise_description | hot-5 encodes a predicted membrane-associated protein that is a member of the Ly-6 superfamily of glycosylphosphatidylinositol (GPI)-linked signaling proteins and is homologous to ODR-2, a neuronally expressed protein required for olfaction; as loss of hot-5 activity via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of HOT-5 in C. elegans development and/or behavior is not yet known. | Paper_evidence | WBPaper00004498 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in olfactory behavior and response to odorant. Predicted to be located in axon and neuronal cell body. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K07A12.6 | |||||||
| Corresponding_transcript | K07A12.6.1 | ||||||||
| Other_sequence | AF324057 | ||||||||
| JI176669.1 | |||||||||
| Associated_feature | WBsf649406 | ||||||||
| WBsf664589 | |||||||||
| WBsf664590 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00003951 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00050101 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033411 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1020399 | ||||||||
| Expr1153802 | |||||||||
| Expr2012543 | |||||||||
| Expr2030782 | |||||||||
| Drives_construct | WBCnstr00036536 | ||||||||
| Construct_product | WBCnstr00036536 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (153) | |||||||||
| Interaction (16) | |||||||||
| Map_info | Map | I | Position | 3.01746 | Error | 8.8e-05 | |||
| Positive | Positive_clone | K07A12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004498 | ||||||||
| Remark | Sequence connection from [Chou JH, Bargmann CI, Sengupta P] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
