WormBase Tree Display for Gene: WBGene00001796
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| WBGene00001796 | SMap | S_parent | Sequence | F54D1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | gtl-2 | Person_evidence | WBPerson51 | |||||
| Sequence_name | F54D1.5 | ||||||||
| Molecular_name | F54D1.5 | ||||||||
| F54D1.5.1 | |||||||||
| CE40563 | |||||||||
| Other_name | CELE_F54D1.5 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | gtl-2 | ||||||||
| DB_info | Database | AceView | gene | 4M45 | |||||
| WormQTL | gene | WBGene00001796 | |||||||
| WormFlux | gene | WBGene00001796 | |||||||
| NDB | locus_tag | CELE_F54D1.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001796|UniProtKB=Q20766 | |||||||
| family | PTHR13800 | ||||||||
| NCBI | gene | 178036 | |||||||
| RefSeq | protein | NM_069717.7 | |||||||
| TrEMBL | UniProtAcc | Q20766 | |||||||
| UniProt_GCRP | UniProtAcc | Q20766 | |||||||
| OMIM | gene | 603576 | |||||||
| 605692 | |||||||||
| 608961 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gtl | ||||||||
| Allele | WBVar01490501 | ||||||||
| WBVar01500079 | |||||||||
| WBVar02058954 | |||||||||
| WBVar02058955 | |||||||||
| WBVar02058956 | |||||||||
| WBVar01731092 | |||||||||
| WBVar00275570 | |||||||||
| WBVar00275571 | |||||||||
| WBVar00250456 | |||||||||
| WBVar00275572 | |||||||||
| WBVar00601259 | |||||||||
| WBVar02079211 | |||||||||
| WBVar01498996 | |||||||||
| WBVar01499925 | |||||||||
| WBVar02134676 | |||||||||
| WBVar01499585 | |||||||||
| WBVar01499586 | |||||||||
| WBVar00942256 | |||||||||
| WBVar00942257 | |||||||||
| WBVar00942258 | |||||||||
| WBVar00942259 | |||||||||
| WBVar00942260 | |||||||||
| WBVar00942261 | |||||||||
| WBVar01966975 | |||||||||
| WBVar01966976 | |||||||||
| WBVar00942262 | |||||||||
| WBVar01857939 | |||||||||
| WBVar00942263 | |||||||||
| WBVar01857940 | |||||||||
| WBVar00942264 | |||||||||
| WBVar01857941 | |||||||||
| WBVar00942265 | |||||||||
| WBVar01857942 | |||||||||
| WBVar00942266 | |||||||||
| WBVar00942267 | |||||||||
| WBVar00942268 | |||||||||
| WBVar00942269 | |||||||||
| WBVar00942270 | |||||||||
| WBVar00942271 | |||||||||
| WBVar00942272 | |||||||||
| WBVar00942273 | |||||||||
| WBVar00942274 | |||||||||
| WBVar00942275 | |||||||||
| WBVar00942276 | |||||||||
| WBVar00942277 | |||||||||
| WBVar00942278 | |||||||||
| WBVar00942279 | |||||||||
| WBVar00942280 | |||||||||
| WBVar00942281 | |||||||||
| WBVar00942282 | |||||||||
| WBVar00942283 | |||||||||
| WBVar00942284 | |||||||||
| WBVar00942285 | |||||||||
| WBVar00942286 | |||||||||
| WBVar00942287 | |||||||||
| WBVar00942288 | |||||||||
| WBVar00942289 | |||||||||
| WBVar00942290 | |||||||||
| WBVar00942291 | |||||||||
| WBVar00942292 | |||||||||
| WBVar00942293 | |||||||||
| WBVar00942294 | |||||||||
| WBVar00942295 | |||||||||
| WBVar00942296 | |||||||||
| WBVar00942297 | |||||||||
| WBVar00942298 | |||||||||
| WBVar00191986 | |||||||||
| WBVar00191987 | |||||||||
| WBVar00191988 | |||||||||
| WBVar00264929 | |||||||||
| WBVar01894155 | |||||||||
| WBVar00435609 | |||||||||
| WBVar00435610 | |||||||||
| WBVar00435611 | |||||||||
| WBVar00435612 | |||||||||
| WBVar00435613 | |||||||||
| WBVar00435614 | |||||||||
| WBVar00435615 | |||||||||
| WBVar00435616 | |||||||||
| WBVar00435617 | |||||||||
| WBVar00435618 | |||||||||
| WBVar00435619 | |||||||||
| WBVar00435620 | |||||||||
| WBVar00435621 | |||||||||
| WBVar00435622 | |||||||||
| WBVar01795542 | |||||||||
| WBVar00435623 | |||||||||
| WBVar00435624 | |||||||||
| WBVar00435625 | |||||||||
| WBVar01500245 | |||||||||
| WBVar00601218 | |||||||||
| WBVar01454192 | |||||||||
| WBVar01454193 | |||||||||
| WBVar01846963 | |||||||||
| Strain | WBStrain00024196 | ||||||||
| WBStrain00005419 | |||||||||
| WBStrain00049842 | |||||||||
| WBStrain00049843 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00069079 | ||||||||
| 00069080 | |||||||||
| 00069081 | |||||||||
| 00069082 | |||||||||
| 00069083 | |||||||||
| 00109391 | |||||||||
| 00109392 | |||||||||
| 00109393 | |||||||||
| 00109394 | |||||||||
| Ortholog (48) | |||||||||
| Paralog | WBGene00001651 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001795 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000425 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00004149 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00008731 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00020972 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00021404 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00021408 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | gtl-2 encodes a predicted receptor-activated calcium channel and represents a family of calcium channels, the other two family members being gtl-1 and gon-2. | Paper_evidence | WBPaper00011683 | |||||
| WBPaper00023556 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable monoatomic cation channel activity. Predicted to be involved in monoatomic cation transmembrane transport. Located in basal plasma membrane. Expressed in excretory canal; excretory cell; hypodermis; pharyngeal muscle cell; and pharynx. Used to study MASA syndrome. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis-parkinsonism/dementia complex 1; cataract; and congenital stationary night blindness 1C. Is an ortholog of human TRPM1 (transient receptor potential cation channel subfamily M member 1); TRPM3 (transient receptor potential cation channel subfamily M member 3); and TRPM7 (transient receptor potential cation channel subfamily M member 7). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:0060246 | |||||||
| Potential_model | DOID:0110867 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7146) | |||||
| DOID:0050534 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7146) | ||||||
| DOID:0111246 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17994) | ||||||
| DOID:83 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17992) | ||||||
| Models_disease_asserted | WBDOannot00000053 | ||||||||
| Molecular_info | Corresponding_CDS | F54D1.5 | |||||||
| Corresponding_CDS_history | F54D1.5:wp57 | ||||||||
| F54D1.5:wp167 | |||||||||
| Corresponding_transcript | F54D1.5.1 | ||||||||
| Other_sequence (12) | |||||||||
| Associated_feature | WBsf718194 | ||||||||
| WBsf997800 | |||||||||
| WBsf997801 | |||||||||
| WBsf1018191 | |||||||||
| WBsf021262 | |||||||||
| WBsf229125 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00109632 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00015597 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00109535 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00109341 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048282 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00109244 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00109438 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001304 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (8) | |||||||||
| Drives_construct | WBCnstr00007205 | ||||||||
| WBCnstr00011623 | |||||||||
| WBCnstr00013198 | |||||||||
| WBCnstr00013672 | |||||||||
| WBCnstr00013883 | |||||||||
| WBCnstr00036677 | |||||||||
| WBCnstr00042689 | |||||||||
| Construct_product | WBCnstr00011623 | ||||||||
| WBCnstr00013198 | |||||||||
| WBCnstr00013672 | |||||||||
| WBCnstr00013883 | |||||||||
| WBCnstr00036677 | |||||||||
| WBCnstr00042689 | |||||||||
| WBCnstr00042690 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (120) | |||||||||
| Interaction (21) | |||||||||
| Map_info | Map | IV | Position | 4.94064 | Error | 0.001769 | |||
| Positive | Positive_clone | F54D1 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4386 | |||||||
| Pseudo_map_position | |||||||||
| Reference (24) | |||||||||
| Remark | Sequence connection from Kwan CSM, Ragnauth CD and Baylis HA [021008 ck1] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
