WormBase Tree Display for Gene: WBGene00000156
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WBGene00000156 | SMap | S_parent | Sequence | K04G2 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | apr-1 | Person_evidence | WBPerson419 | |||||
Sequence_name | K04G2.8 | ||||||||
Molecular_name | K04G2.8a | ||||||||
K04G2.8a.1 | |||||||||
CE06102 | |||||||||
K04G2.8b | |||||||||
CE18016 | |||||||||
K04G2.8c | |||||||||
CE51809 | |||||||||
K04G2.8b.1 | |||||||||
K04G2.8c.1 | |||||||||
Other_name | APC | Paper_evidence | WBPaper00044307 | ||||||
CELE_K04G2.8 | Accession_evidence | NDB | BX284601 | ||||||
Public_name | apr-1 | ||||||||
DB_info | Database (13) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | apr | ||||||||
Allele | WBVar00275469 | Inferred_automatically | From strain object: AH75 | ||||||
WBVar00296576 | Inferred_automatically | From strain object: HZ194 | |||||||
WBVar01491792 | |||||||||
WBVar00154850 | |||||||||
WBVar00154851 | |||||||||
WBVar00094057 | |||||||||
WBVar01574018 | |||||||||
WBVar00653058 | |||||||||
WBVar02016343 | |||||||||
WBVar00653059 | |||||||||
WBVar01894786 | |||||||||
WBVar00653060 | |||||||||
WBVar00653061 | |||||||||
WBVar00653062 | |||||||||
WBVar00653063 | |||||||||
WBVar01500105 | |||||||||
WBVar00653064 | |||||||||
WBVar01499739 | |||||||||
WBVar00653065 | |||||||||
WBVar00653066 | |||||||||
WBVar00653067 | |||||||||
WBVar00653068 | |||||||||
WBVar00653069 | |||||||||
WBVar00653070 | |||||||||
WBVar00653071 | |||||||||
WBVar00653072 | |||||||||
WBVar00653073 | |||||||||
WBVar00653074 | |||||||||
WBVar00653075 | |||||||||
WBVar00653076 | |||||||||
WBVar00653077 | |||||||||
WBVar00653078 | |||||||||
WBVar00653079 | |||||||||
WBVar00653080 | |||||||||
WBVar00653081 | |||||||||
WBVar00653082 | |||||||||
WBVar01495707 | |||||||||
WBVar00653083 | |||||||||
WBVar00653084 | |||||||||
WBVar00653085 | |||||||||
WBVar00653086 | |||||||||
WBVar00653087 | |||||||||
WBVar01498288 | |||||||||
WBVar00653088 | |||||||||
WBVar00653089 | |||||||||
WBVar01911828 | |||||||||
WBVar01681435 | |||||||||
WBVar01499786 | |||||||||
WBVar01499054 | |||||||||
WBVar02006265 | |||||||||
WBVar01641087 | |||||||||
WBVar01432239 | |||||||||
WBVar01432240 | |||||||||
WBVar01340690 | |||||||||
WBVar01340701 | |||||||||
WBVar01340713 | |||||||||
WBVar02127951 | |||||||||
WBVar00339401 | |||||||||
WBVar00339402 | |||||||||
WBVar00339403 | |||||||||
WBVar00339404 | |||||||||
WBVar00339405 | |||||||||
WBVar00339406 | |||||||||
WBVar00339407 | |||||||||
WBVar00339408 | |||||||||
WBVar00339409 | |||||||||
WBVar00339410 | |||||||||
WBVar01498959 | |||||||||
WBVar01420645 | |||||||||
Possibly_affected_by | WBVar02153202 | ||||||||
Legacy_information | [Rocheleau CE] apr-1 for APC (adenomatous polyposis coli) Related gene. No mutants known, 26% of apr-1(RNAi) embryos lack endoderm, overproduce pharyngeal tissue, E divides prematurely, adopts MS-like fate. Predicted gene K04G2.8. Allele zh10 isolated, see below. [sdm 12/01] | ||||||||
Strain | WBStrain00037280 | ||||||||
WBStrain00000140 | |||||||||
WBStrain00008585 | |||||||||
WBStrain00024309 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (77) | |||||||||
Ortholog | WBGene00070008 | Caenorhabditis remanei | From_analysis | OMA | |||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00030061 | Caenorhabditis briggsae | From_analysis | Hillier-set | ||||||
OrthoMCL | |||||||||
OMA | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00146816 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00150302 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00099225 | Pristionchus pacificus | From_analysis | OMA | ||||||
Inparanoid_8 | |||||||||
WBGene00122252 | Caenorhabditis japonica | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00225075 | Brugia malayi | From_analysis | WormBase-Compara | ||||||
CBOVI.g10245 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
CSP21.g7151 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
CSP26.g19096 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP28.g7928 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP29.g4841 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP31.g12319 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
CSP32.g16913 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP32.g8287 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP38.g6146 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
CSP39.g850 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP40.g14192 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
CSP40.g16935 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cang_2012_03_13_00301.g8801 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
Cni-apr-1 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_00160.g5962 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
FL83_13198 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_000446 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
OTIPU.nOt.2.0.1.g10596 | Oscheius tipulae | From_analysis | WormBase-Compara | ||||||
Pan_g7404 | Panagrellus redivivus | From_analysis | WormBase-Compara | ||||||
Sp34_10063300 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrI_pilon.g1515 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00237733 | Onchocerca volvulus | From_analysis | WormBase-Compara | ||||||
WBGene00262578 | Strongyloides ratti | From_analysis | WormBase-Compara | ||||||
WBGene00293892 | Trichuris muris | From_analysis | WormBase-Compara | ||||||
FB:FBgn0026598 | Drosophila melanogaster | From_analysis | EnsEMBL-Compara | ||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
SonicParanoid | |||||||||
FB:FBgn0015589 | Drosophila melanogaster | From_analysis | EnsEMBL-Compara | ||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
ZFIN:ZDB-GENE-031112-7 | Danio rerio | From_analysis | EnsEMBL-Compara | ||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
ZFIN:ZDB-GENE-090422-1 | Danio rerio | From_analysis | EnsEMBL-Compara | ||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
HGNC:583 | Homo sapiens | From_analysis | EnsEMBL-Compara | ||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
HGNC:24036 | Homo sapiens | From_analysis | EnsEMBL-Compara | ||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
MGI:88039 | Mus musculus | From_analysis | EnsEMBL-Compara | ||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
MGI:1346052 | Mus musculus | From_analysis | EnsEMBL-Compara | ||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
RGD:2123 | Rattus norvegicus | From_analysis | EnsEMBL-Compara | ||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
RGD:1308256 | Rattus norvegicus | From_analysis | EnsEMBL-Compara | ||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
Structured_description | Concise_description | The apr-1 gene encodes an ortholog of human APC (OMIM:175100, mutated in familial adenomatous polyposis) that is required for germline fertility, the control of homeodomain expression (CEH-13 and LIN-39) during embryogenesis and vulval development, and for the migration and elongation of hypodermal cells during embryo morphogenesis; APR-1 is thought to reside in adherens junctions, while also stimulating two beta-catenins in Wnt signalling (HMP-2 in migrating epithelial cells, and BAR-1 in the vulval precursor cells); however, APR-1 also binds PRY-1/axin, and with PRY-1 inhibits RAS-independent Wnt induction of LIN-39; APR-1 along with MOM-5/Frizzled receptor and GSK-3 kinase is also required for the engulfment of apoptotic cells and migration of the distal tip cell in the gonad, indicating that Wnt signaling can regulate cytoskeletal rearrangements via CED-10/RAC; phosphorylated APR-1 binds CED-2/CrkII in yeast two hybrid screens, this binding and genetic studies suggest that APR-1 and MOM-5 activate the CED-2/5/12 branch of the engulfment pathway. | Paper_evidence (12) | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson567 | |||||||||
Date_last_updated | 25 May 2011 00:00:00 | ||||||||
Automated_description | Enables beta-catenin binding activity. Involved in several processes, including embryonic morphogenesis; regulation of Wnt signaling pathway; and regulation of multicellular organismal development. Located in adherens junction; cell cortex; and nucleus. Expressed in several structures, including P3.p hermaphrodite; P4.p hermaphrodite; P8.p hermaphrodite; distal tip cell; and excretory cell. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease; Sotos syndrome 3; carcinoma (multiple); and gastrointestinal system cancer (multiple). Is an ortholog of human APC (APC regulator of WNT signaling pathway) and APC2 (APC regulator of WNT signaling pathway 2). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model (20) | ||||||||
Molecular_info | Corresponding_CDS | K04G2.8a | |||||||
K04G2.8b | |||||||||
K04G2.8c | |||||||||
Corresponding_transcript | K04G2.8a.1 | ||||||||
K04G2.8b.1 | |||||||||
K04G2.8c.1 | |||||||||
Other_sequence | AF013950 | ||||||||
CGC00612_1 | |||||||||
ACC25655_1 | |||||||||
EX555243.1 | |||||||||
CBC06635_1 | |||||||||
Associated_feature | WBsf656598 | ||||||||
WBsf218114 | |||||||||
Experimental_info | RNAi_result | WBRNAi00101650 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00101537 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00062614 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00091594 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00099035 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101533 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101666 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00091593 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00099029 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101535 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00099037 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00077089 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00112568 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00025870 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101610 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00062622 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00098844 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00091596 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101358 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101857 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00022931 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00062631 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00098802 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00099036 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00098925 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00092551 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00068826 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00099040 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00084512 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101630 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00091565 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00099005 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00061053 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00091598 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00003922 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00098815 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00068307 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00110439 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00070927 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00062618 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00091588 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00077086 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00022930 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00099031 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00091584 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00001890 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00092772 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101668 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101640 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00068229 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00062621 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00025869 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101468 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00070925 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101853 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101676 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00068306 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00084511 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00077088 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00111668 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101660 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101815 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00077305 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00061056 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00022928 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00092550 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101709 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00068308 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101814 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00068305 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101625 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101530 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00064700 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00068304 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00098982 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101539 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00077090 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101508 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101600 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00091595 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00091580 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00077087 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00099041 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00098848 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00077292 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00064496 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00098980 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00084510 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00098846 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00098981 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00062617 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00091592 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00033968 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00091581 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101465 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00098801 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00098995 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101663 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00099004 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00070928 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00098425 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101518 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00022929 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00049941 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1046 | ||||||||
Expr4600 | |||||||||
Expr12119 | |||||||||
Expr12448 | |||||||||
Expr15118 | |||||||||
Expr1028112 | |||||||||
Expr1030085 | |||||||||
Expr1153646 | |||||||||
Expr2009365 | |||||||||
Expr2027601 | |||||||||
Drives_construct | WBCnstr00005188 | ||||||||
WBCnstr00007256 | |||||||||
WBCnstr00009075 | |||||||||
WBCnstr00009116 | |||||||||
WBCnstr00012108 | |||||||||
WBCnstr00016098 | |||||||||
WBCnstr00020198 | |||||||||
WBCnstr00021087 | |||||||||
WBCnstr00037698 | |||||||||
Construct_product | WBCnstr00000526 | ||||||||
WBCnstr00007257 | |||||||||
WBCnstr00007258 | |||||||||
WBCnstr00009057 | |||||||||
WBCnstr00009075 | |||||||||
WBCnstr00012108 | |||||||||
WBCnstr00016098 | |||||||||
WBCnstr00020198 | |||||||||
WBCnstr00021087 | |||||||||
WBCnstr00037698 | |||||||||
Antibody | WBAntibody00000276 | ||||||||
WBAntibody00000277 | |||||||||
Microarray_results (25) | |||||||||
Expression_cluster (124) | |||||||||
Interaction (179) | |||||||||
WBProcess | WBbiopr:00000073 | ||||||||
Map_info | Map | I | Position | 2.43771 | Error | 0.002342 | |||
Positive | Positive_clone | K04G2 | Person_evidence | WBPerson524 | |||||
Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
Mapping_data | Multi_point | 4159 | |||||||
4893 | |||||||||
5616 | |||||||||
Pseudo_map_position | |||||||||
Reference (108) | |||||||||
Picture | WBPicture0000013084 | ||||||||
Remark | Data extracted from Rocheleau et al. (1997) | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |