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WormBase Tree Display for Gene: WBGene00003588

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Name Class

WBGene00003588SMapS_parentSequenceZC155
IdentityVersion1
NameCGC_namenex-1
Sequence_nameZC155.1
Molecular_nameZC155.1
ZC155.1.1
CE01431
Other_nameCELE_ZC155.1Accession_evidenceNDBBX284603
Public_namenex-1
DB_infoDatabaseAceViewgene3G315
WormQTLgeneWBGene00003588
WormFluxgeneWBGene00003588
NDBlocus_tagCELE_ZC155.1
PanthergeneCAEEL|WormBase=WBGene00003588|UniProtKB=G5EEA8
familyPTHR10502
NCBIgene175714
RefSeqproteinNM_065708.10
TrEMBLUniProtAccG5EEA8
UniProt_GCRPUniProtAccG5EEA8
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:32WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnex
AlleleWBVar00826377
WBVar00826378
WBVar00826379
WBVar00826380
WBVar00826381
WBVar00826382
WBVar00826383
WBVar00826384
WBVar00826385
WBVar00826386
WBVar00826387
WBVar00826388
WBVar00826389
WBVar00826390
WBVar00056211
WBVar00056216
WBVar02150778
WBVar00145555
WBVar00397516
WBVar00397517
WBVar00397518
WBVar00397519
WBVar00397520
Legacy_information[C.elegansII] NMK. Encodes protein with 42% identity to bovine annexin IV. Antibody stains pharyngeal grinder, gland cells, spermathecal folds. [CGC]
StrainWBStrain00035608
RNASeq_FPKM (74)
GO_annotation (19)
OrthologWBGene00099462Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00069160Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00040014Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00102728Pristionchus pacificusFrom_analysisOMA
WBGene00161811Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00126299Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00207969Caenorhabditis japonicaFrom_analysisTreeFam
CBOVI.g5246Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g15303Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g6720Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g19767Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g3710Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g20828Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g12160Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g19688Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g3115Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g7840Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00011.g839Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_13852.g24413Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-nex-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g12541Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01581.g21869Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_06665.g36854Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_11058Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_008485Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04835Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_30024900Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g7668Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00215213Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00217494Caenorhabditis japonicaFrom_analysisWormBase-Compara
ZFIN:ZDB-GENE-010406-1Danio rerioFrom_analysisOrthoFinder
PhylomeDB
MGI:1917037Mus musculusFrom_analysisOMA
OrthoFinder
PhylomeDB
RGD:1307545Rattus norvegicusFrom_analysisOMA
OrthoFinder
PhylomeDB
ParalogWBGene00003589Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003590Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003591Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionnex-1 encodes an annexin, a member of a family of calcium-dependent phospholipid binding proteins; NEX-1 is required for efficient engulfment of apoptotic cell corpses in the pharynx, and may also function in other membrane fusion events, such as exocytosis; NEX-1 in vitro can bind phosphatidylserine, phosphatidylinositol, heparin, heparan sulfate, and chondroitin sulfate; NEX-1 is expressed in the pharynx, hypodermal cells, the vulva, the uterus, the spermathecal valve, and yolk granules of maturing oocytes.Paper_evidenceWBPaper00003602
WBPaper00004309
WBPaper00005874
Curator_confirmedWBPerson1843
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnables heparin binding activity and phospholipid binding activity. Involved in engulfment of apoptotic cell. Located in intracellular membrane-bounded organelle and plasma membrane. Expressed in hypodermis; pharynx; spermathecal-uterine junction; uterine toroidal epithelial cell; and vulva.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSZC155.1
Corresponding_transcriptZC155.1.1
Other_sequenceTLC00236_1
EX565409.1
BQ381252.1
Acan_isotig10128
PPC19017_1
DN190632.1
FE909107.1
JI179429.1
AS01230
HG03755
HCC01655_1
ASC08250_1
ASC02421_1
DVC02687_1
CRC06670_1
HC03352
DN191287.1
DN190665.1
DN190717.1
Tcol_isotig16712
Tcol_isotig16783
FE916732.1
FK804835.1
TX00403
HBC17690_1
AS03910
AAC00004_1
ES880568.1
HC05626
ACC10173_1
FE915510.1
EX916700.1
AS01639
DN190461.1
EX910179.1
AS09767
EV850941.1
EX828485.1
EG025402.1
Tcir_isotig06843
TCC02199_1
Tcol_isotig14132
JI175774.1
DN190528.1
ASC07215_1
AE01028
FJ768021.1
DN190508.1
DN191276.1
DN191143.1
TX00248
AI205471.1
HBC03960_1
HG02851
EX536429.1
HC01389
AS00806
FE911528.1
JO475531.1
EX009540.1
CBC09452_1
HC06123
DN190701.1
Oden_isotig28811
OVC01381_1
AF469059.1
FE913463.1
Dviv_isotig13678
BMC02129_1
JI180819.1
AA611004.1
AS01637
NB09989
FE916974.1
Oden_isotig17938
DN191329.1
TDC02079_1
JI215435.1
CR11530
ACC10736_1
EX555144.1
AYC00198_1
DN190550.1
FK806262.1
DN190709.1
Name_isotig01652
HC09835
AS01016
CB036286.1
TLC00203_1
HGC10481_1
NBC04190_1
DN191145.1
TCC00673_1
TX01034
Hbac_isotig01697
JI173166.1
ACC01305_1
HGC01138_1
JO468379.1
DN190682.1
CR11571
EX828209.1
FK806964.1
ASC00730_1
DN191153.1
CR02603
AS04107
CGC01364_1
DN190928.1
ES413745.1
ASC00851_1
HG03646
CJC02600_1
DN191233.1
ES880425.1
OVC03804
FE911406.1
Associated_featureWBsf654958
WBsf717068
WBsf717895
WBsf992337
WBsf1014858
WBsf224881
Experimental_infoRNAi_resultWBRNAi00107729Inferred_automaticallyRNAi_primary
WBRNAi00087553Inferred_automaticallyRNAi_primary
WBRNAi00067291Inferred_automaticallyRNAi_primary
WBRNAi00027665Inferred_automaticallyRNAi_primary
WBRNAi00021578Inferred_automaticallyRNAi_primary
WBRNAi00080498Inferred_automaticallyRNAi_primary
WBRNAi00005118Inferred_automaticallyRNAi_primary
WBRNAi00107730Inferred_automaticallyRNAi_primary
WBRNAi00058747Inferred_automaticallyRNAi_primary
WBRNAi00041886Inferred_automaticallyRNAi_primary
Expr_patternExpr1209
Expr1210
Expr1560
Expr8283
Expr1022217
Expr1031638
Expr1162168
Expr2013979
Expr2032219
Drives_constructWBCnstr00010152
WBCnstr00036022
Construct_productWBCnstr00036022
AntibodyWBAntibody00000107
WBAntibody00001198
Microarray_results (24)
Expression_cluster (227)
Interaction (36)
WBProcessWBbiopr:00000015
Map_infoMapIIIPosition-1.97258Error0.014291
PositivePositive_cloneZC155Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4167
4513
Pseudo_map_position
Reference (17)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene