WormBase Tree Display for Gene: WBGene00015285

WBGene00015285 SMap: S_parent: Sequence: C01B12
  Identity: Version: 2
    Name: CGC_name: gmeb-1 Person_evidence: WBPerson260
      Sequence_name: C01B12.2
      Molecular_name: C01B12.2
        C01B12.2.1
        CE39124
      Other_name: CELE_C01B12.2 Accession_evidence: NDB BX284602
      Public_name: gmeb-1
    DB_info: Database: AceView gene 2A311
        WormQTL gene WBGene00015285
        WormFlux gene WBGene00015285
        NDB locus_tag CELE_C01B12.2
        Panther gene CAEEL|WormBase=WBGene00015285|UniProtKB=O17208
          family PTHR10417
        NCBI gene 182061
        RefSeq protein NM_061233.9
        TREEFAM TREEFAM_ID TF317090
        TrEMBL UniProtAcc O17208
        UniProt_GCRP UniProtAcc O17208
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 22 Sep 2011 11:35:55 WBPerson2970 Name_change: CGC_name: gmeb-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: gmeb
    Allele: WBVar00261673
      WBVar00261678
      WBVar01499734
      WBVar01290914
      WBVar01290915
      WBVar01290916
      WBVar01500106
      WBVar00146244
      WBVar01474143
      WBVar01435161
      WBVar01498661
      WBVar01557806
      WBVar00696020
      WBVar00696021
      WBVar00696022
      WBVar00696023
      WBVar00696024
      WBVar00696025
      WBVar00696026
      WBVar00696027
      WBVar00696028
      WBVar00696029
      WBVar00696030
      WBVar00696031
      WBVar00696032
      WBVar00696033
      WBVar00696034
      WBVar00696035
      WBVar00696036
      WBVar00696037
      WBVar00696038
      WBVar00696039
      WBVar00696040
      WBVar00696041
      WBVar00696042
      WBVar00601153
      WBVar01715426
      WBVar01473780
      WBVar02017192
      WBVar01681492
      WBVar02125231
      WBVar00353929
      WBVar00353930
      WBVar00353931
      WBVar00353932
      WBVar00353933
      WBVar00353934
      WBVar00300776
    Strain: WBStrain00036966
      WBStrain00037762
    RNASeq_FPKM (74)
    GO_annotation: 00029467
      00121206
    Ortholog (25)
    Paralog: WBGene00007732 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00008092 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00010010 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and metal ion binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Is an ortholog of human GMEB1 (glucocorticoid modulatory element binding protein 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info (6)
  Experimental_info: RNAi_result: WBRNAi00009886 Inferred_automatically: RNAi_primary
      WBRNAi00039246 Inferred_automatically: RNAi_primary
      WBRNAi00112406 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1024785
      Expr1036546
      Expr1143387
      Expr1200114
      Expr2012151
      Expr2030387
    Drives_construct: WBCnstr00028959
    Construct_product: WBCnstr00016749
      WBCnstr00028959
    Microarray_results (21)
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Oogenic
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053295:lin-22(ot267)_downregulated
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053321:embryo-to-L1_upregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
      WBPaper00053321:lin-15B(RNAi)_downregulated_starved-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053321:PGCs_depleted_NuGen
      WBPaper00053599:mitosis_vs_meiosis_downregulated
      WBPaper00053599:oocyte_vs_mitosis_downregulated
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055482:pmt-2(RNAi)_upregulated
      WBPaper00056443:DietaryRestriction_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00057288:Cold_upregulated_transcript
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058691:set-2(bn129)_downregulated
      WBPaper00059471:EGL-43_interacting
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061340:B
      WBPaper00061340:Intestinal_and_rectal_muscle
      WBPaper00061527:cdc-42_17192-rab-5_18073
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064315:mes-3(bn199)_upregulated_EGCs
      WBPaper00064315:mes-3(bn199)_upregulated_PGCs
      WBPaper00064315:mes-4(bn73)_upregulated_EGCs
      WBPaper00064871:hypoxia_downregulated_F1
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065258:anchor-cell_enriched
      WBPaper00065835:Day11_vs_Day1_upregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      cgc4489_group_19
      WBPaper00025032:cluster_175
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00032165:differentially_expressed_with_age_medoid_1
      WBPaper00032948:StarveUp3
      WBPaper00035084:embryo_enriched_AIN-2_IP
      WBPaper00035227:heat_shock_regulated
      WBPaper00035479:daf-16(RNAi)_downregulated
      WBPaper00035588:alg-1(-)_upregulated
      WBPaper00036286:Pattern_B
      WBPaper00037695:WC_5-day
      WBPaper00040210:Chlorpyrifos_24C_regulated
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040985:AIN-2_asynchronous_intestine
      WBPaper00040985:AIN-2_asynchronous_muscle
      WBPaper00040985:AIN-2_L4_intestine
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00053827:pyoverdine_upregulated
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(122_min)
      [cgc5767]:expression_class_E_pi(143_min)
      [cgc5767]:expression_class_SE
      [cgc5767]:expression_class_SE_pi(122_min)
      [cgc5767]:expression_class_SE_pi(143_min)
    Interaction (13)
  Map_info: Map: II Position: -18.0031
    Positive: Positive_clone: C01B12 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027309
    WBPaper00038491
    WBPaper00055090
    WBPaper00061738
    WBPaper00065308
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene