WormBase Tree Display for Gene: WBGene00010882

WBGene00010882 SMap: S_parent: Sequence: CHROMOSOME_IV
  Identity: Version: 4
    Name: CGC_name: atg-7 Paper_evidence: WBPaper00028973
          Person_evidence: WBPerson649
      Sequence_name: M7.5
      Molecular_name: M7.5
        M7.5.1
        CE18887
      Other_name: atgr-7
        CELE_M7.5 Accession_evidence: NDB BX284604
      Public_name: atg-7
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:51 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 27 Apr 2006 11:26:11 WBPerson2970 Name_change: CGC_name: atgr-7
        3 15 Mar 2007 08:29:05 WBPerson2970 Name_change: Other_name: atg-7
        4 29 Feb 2008 11:29:00 WBPerson2970 Name_change: CGC_name: atg-7
                Other_name: atgr-7
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: atg
    Allele: WBVar01474468 Inferred_automatically: From strain object: HZ1686
      WBVar00531949
      WBVar01731077
      WBVar01731078
      WBVar01731079
      WBVar01500079
      WBVar01498996
      WBVar01499925
      WBVar00251770
      WBVar01857739
      WBVar01857740
      WBVar01489090
      WBVar01795476
      WBVar02123093
      WBVar02124207
      WBVar00941218
      WBVar00941219
      WBVar00941220
      WBVar00941221
      WBVar00941222
      WBVar00941223
      WBVar00941224
      WBVar00941225
      WBVar00941226
      WBVar00941227
      WBVar00941228
      WBVar00941229
      WBVar00941230
      WBVar00941231
      WBVar00941232
      WBVar00941233
      WBVar00941234
      WBVar00941235
      WBVar00941236
      WBVar00435257
      WBVar00435258
      WBVar00435259
      WBVar00435260
      WBVar00435261
      WBVar00249858
      WBVar00435262
      WBVar00435263
      WBVar01500245
      WBVar02157749
      WBVar02157750
    Strain: WBStrain00008599
      WBStrain00051662
      WBStrain00051664
    RNASeq_FPKM (74)
    GO_annotation (22)
    Contained_in_operon: CEOP4404
    Ortholog (39)
    Paralog: WBGene00000142 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00004341 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00006699 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00006700 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00006735 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00020184 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00018357 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description (2)
  Disease_info: Potential_model: DOID:0070412 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:16935)
  Molecular_info: Corresponding_CDS: M7.5
    Corresponding_transcript: M7.5.1
    Other_sequence (35)
    Associated_feature: WBsf652185
      WBsf981819
      WBsf997759
      WBsf230816
  Experimental_info: RNAi_result (35)
    Expr_pattern: Expr1021948
      Expr1034772
      Expr1154760
      Expr2009495
      Expr2027732
    Drives_construct: WBCnstr00037850
    Construct_product: WBCnstr00006221
      WBCnstr00006228
      WBCnstr00037850
    Microarray_results (20)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00037682:sma-2_upregulated
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00040221:DAF-12_target_ALF9
      WBPaper00044736:flat_dev_expression
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00045974:NSM_enriched_totalRNA_RNAseq
      WBPaper00045974:NSM_enriched_totalRNA_tiling
      WBPaper00046509:htz-1(ok3099)_upregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050686:glp-1(e2141)_upregulated
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:body-wall-muscle_cytoplasm_expressed
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:epidermis_nucleus_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051265:F4_morc-1(tm6048)_upregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053814:15C_downregulated_OP50
      WBPaper00055648:germline_expressed
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00057288:Cold_upregulated_transcript
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059763:neuron_expressed
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060014:set-2(zr2012)_upregulated
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061478:SUMO-conjugated_protein
      WBPaper00061527:cids-2_2203-attf-2_2451
      WBPaper00061572:oleic-acid-specific_mating_upregulated
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065373:Cisplatin_upregulated_WT
      WBPaper00065373:sek-1(km4)_upregulated_cisplatin
      WBPaper00065373:sek-1(km4)_upregulated_Ref
      WBPaper00065993:glp-1(e2141)_downregulated
      cgc4386_cluster_6_2
      WBPaper00025032:cluster_45
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00030985:Enterococcus_faecalis_downregulated
      WBPaper00032165:differentially_expressed_with_age_medoid_2
      WBPaper00035227:heat_shock_regulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00036286:Pattern_B
      WBPaper00040858:eQTL_regulated_old
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_UVC-EtBr-exposed_24h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00055899:nitroguanidine_regulated
      [cgc5767]:cluster_4
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_ET
      [cgc5767]:expression_class_ET_max(122_min)
      [cgc5767]:expression_class_E_pi(53_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
      [cgc5767]:expression_class_MET
      [cgc6390]:mixed_oogenesis-somatic
    Interaction (82)
    WBProcess: WBbiopr:00000003
  Map_info: Map: IV Position: 4.82542 Error: 0.000636
    Positive: Positive_clone: M7 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (47)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene