WormBase Tree Display for Gene: WBGene00007726

WBGene00007726 SMap: S_parent: Sequence: C25F9
  Identity: Version: 2
    Name: Sequence_name: C25F9.6
      Molecular_name: C25F9.6
        C25F9.6.1
        CE42956
        C25F9.6.2
      Other_name: CELE_C25F9.6 Accession_evidence: NDB BX284605
      Public_name: C25F9.6
    DB_info: Database: AceView gene 5T880
            5T878
        WormQTL gene WBGene00007726
        WormFlux gene WBGene00007726
        NDB locus_tag CELE_C25F9.6
        NCBI gene 182906
        RefSeq protein NM_001392697.1
        TrEMBL UniProtAcc O62075
        UniProt_GCRP UniProtAcc O62075
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:48 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 03 May 2007 11:52:52 WBPerson4025 Event: Split_into: WBGene00045412
      Split_into: WBGene00045412
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar02124282
      WBVar00091261
      WBVar01499709
      WBVar01751692
      WBVar01751693
      WBVar02124842
      WBVar01751694
      WBVar01978063
      WBVar02074901
      WBVar02074902
      WBVar01978064
      WBVar01751695
      WBVar01751696
      WBVar02121908
      WBVar02076225
      WBVar02076226
      WBVar02076974
      WBVar02076227
      WBVar02075294
      WBVar01499566
      WBVar01876511
      WBVar02122876
      WBVar01597825
      WBVar00091149
      WBVar00487807
      WBVar02122706
      WBVar00487808
      WBVar00487809
      WBVar00487810
      WBVar00487811
      WBVar00487812
      WBVar00487813
      WBVar01494827
      WBVar02079471
      WBVar02079472
      WBVar02076676
      WBVar02076677
      WBVar02076498
      WBVar02076499
      WBVar01499446
      WBVar02120531
      WBVar02123481
      WBVar01099929
      WBVar01099930
      WBVar01498549
      WBVar01099931
      WBVar01099932
      WBVar01099933
      WBVar01099934
      WBVar01099935
      WBVar02075408
      WBVar01099936
      WBVar01099937
      WBVar01099938
      WBVar01099939
      WBVar02122402
      WBVar02079332
      WBVar02121484
      WBVar01499299
      WBVar00070257
      WBVar02122044
      WBVar00070262
      WBVar00070267
      WBVar01495447
      WBVar00070272
      WBVar00070277
      WBVar02121326
      WBVar01498958
      WBVar02124642
      WBVar02077505
      WBVar02079736
    RNASeq_FPKM (74)
    Ortholog: chrV_pilon.g17883 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog: WBGene00005833 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00045411 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00045412 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in DVC; head mesodermal cell; and intestine based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on microarray; tiling array; and RNA-seq studies. Is affected by fourteen chemicals including Rifampin; D-glucose; and Zidovudine based on microarray and RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C25F9.6
    Corresponding_CDS_history: C25F9.6:wp175
      C25F9.6:wp194
    Corresponding_transcript: C25F9.6.1
      C25F9.6.2
  Experimental_info: RNAi_result: WBRNAi00011173 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1145241
      Expr2001097
      Expr2019318
    Microarray_results (7)
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00033070:Elbe_upregulated
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:intestine_CoreEnriched
      WBPaper00037950:intestine_embryo_enriched
      WBPaper00037950:intestine_embryo_SelectivelyEnriched
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:intestine_larva_enriched
      WBPaper00037950:intestine_larva_SelectivelyEnriched
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_downregulated_RNAseq
      WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00040560:hpl-2_L3_downregulated
      WBPaper00042561:smg-2(RNAi)_upregulated
      WBPaper00042561:smgl-1(RNAi)_upregulated
      WBPaper00042561:smgl-2(RNAi)_upregulated
      WBPaper00044578:reduced-humidity_downregulated_microarray
      WBPaper00044656:tatn-1(qd182)_upregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00044786:emr-1(gk119)_upregulated
      WBPaper00045257:bar-1(ga80)_upregulated
      WBPaper00045316:prg-1_upregulated_L4
      WBPaper00045774:clk-1_downregulated
      WBPaper00046496:Rifampicin_upregulated
      WBPaper00046509:lin-35(n745)_upregulated
      WBPaper00049018:swsn-2.2(RNAi)_upregulated
      WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
      WBPaper00049920:Glucose-Diet_upregulated_N2
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050504:hrp-2(RNAi)_upregulated
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00051404:alg-1(gk214)_upregulated
      WBPaper00051404:alg-2(ok304)_upregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053388:dauer_regulated_Cluster4
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00053909:N2_vs_CB4856_upregulated
      WBPaper00055013:hmg-3(bar24)_downregulated
      WBPaper00055137:S.maltophilia_upregulated
      WBPaper00055354:Metformin_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055971:nhl-2(ok818)_20C_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056169:rrf-3(pk1426)_upregulated_L4
      WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
      WBPaper00056826:hmc_biased
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058711:wdr-5(ok1417)_downregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00059421:daf-1(m40)_upregulated
      WBPaper00059605:mut-16(pk710)_upregulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059728:5ug_cholesterol_upregulated
      WBPaper00059728:20ug_cholesterol_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060526:plp-1(ok2155)_downregulated
      WBPaper00060764:swsn-1(os22ts)_upregulated
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061007:HB101_upregulated
      WBPaper00061007:S.aquatilis_upregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061340:DVC
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061530:nhr-49(e2144)_upregulated
      WBPaper00061636:atracurium_downregulated
      WBPaper00062056:lin-35(n745)_upregulated
      WBPaper00062156:jmjd-1.2(zr1010)_upregulated
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062184:PA14_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
      WBPaper00062446:nhr-8(hd117)_downregulated
      WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064505:tamoxifen_downregulated
      WBPaper00064532:pals-22(jy3)_upregulated
      WBPaper00064632:daf-2(e1370)_downregulated_intestine
      WBPaper00064637:cox-5B(RNAi)_upregulated
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
      WBPaper00065029:cadmium_upregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065096:npr-8(ok1439)_downregulated_Day10_25C
      WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C
      WBPaper00065315:mating_upregulated_Day2-7
      WBPaper00065734:unc-25(e156)_upregulated
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066204:CdCl2_upregulated_mRNA
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
      WBPaper00066232:hsf-1(RNAi)_upregulated_WT
      cgc4489_group_19
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00027111:rrf-1(pk1417)_upregulated
      WBPaper00028789:PA14_vs_gacA_upregulated_4hr
      WBPaper00028789:PA14_vs_OP50_upregulated_4hr
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00032062:age_regulated_genes
      WBPaper00035227:heat_shock_regulated
      WBPaper00038172:tax-6null_up_regulated
      WBPaper00038304:octr-1_regulated
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00044091:Bpseudomallei_induced_2h
      WBPaper00044091:Bpseudomallei_induced_4h
      WBPaper00044091:Bpseudomallei_induced_8h
      WBPaper00044091:Bpseudomallei_induced_12h
      WBPaper00045673:colistin_upregulated
      WBPaper00045960:L4-lethargus_upregulated
      WBPaper00046548:dafachronic-acid_downregulated
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00055899:nitroguanidine_regulated
      WBPaper00056330:mrps-5(RNAi)_upregulated
      [cgc6390]:Cluster_A
    Interaction: WBInteraction000348125
      WBInteraction000370536
  Map_info: Positive: Positive_clone: C25F9 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 21.7201
  Method: Gene