WormBase Tree Display for Gene: WBGene00003596

WBGene00003596 Evidence: Author_evidence: Slack FJ
  SMap: S_parent: Sequence: T19A6
  Identity: Version: 1
    Name: CGC_name: ngp-1 Person_evidence: WBPerson599
      Sequence_name: T19A6.2
      Molecular_name: T19A6.2a
        T19A6.2a.1
        CE32493
        T19A6.2b
        CE32494
        T19A6.2b.1
      Other_name: CELE_T19A6.2 Accession_evidence: NDB BX284601
      Public_name: ngp-1
    DB_info: Database: AceView gene 1I973
        WormQTL gene WBGene00003596
        WormFlux gene WBGene00003596
        NDB locus_tag CELE_T19A6.2
        Panther gene CAEEL|WormBase=WBGene00003596|UniProtKB=Q9XXN4
          family PTHR11089
        NCBI gene 172624
        RefSeq protein NM_059874.6
            NM_001392677.1
        TREEFAM TREEFAM_ID TF105668
        TrEMBL UniProtAcc Q9U365
            Q9XXN4
        UniProt_GCRP UniProtAcc Q9XXN4
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:32 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ngp
    Allele: WBVar00655052
      WBVar00655053
      WBVar00655054
      WBVar00655055
      WBVar00655056
      WBVar00655057
      WBVar00655058
      WBVar00655059
      WBVar00655060
      WBVar00655061
      WBVar00655062
      WBVar00655063
      WBVar00655064
      WBVar00655065
      WBVar00655066
      WBVar00655067
      WBVar00655068
      WBVar01475796
      WBVar00655069
      WBVar00655070
      WBVar00155044
      WBVar00655071
      WBVar00155045
      WBVar01500105
      WBVar01499739
      WBVar01429527
      WBVar01499786
      WBVar01499054
      WBVar00340071
      WBVar00340072
      WBVar00340073
      WBVar00340074
      WBVar00340075
      WBVar00340076
      WBVar00340077
      WBVar00070694
      WBVar01432302
      WBVar01391896
      WBVar00655044
      WBVar00655045
      WBVar00307512
      WBVar00655046
      WBVar00655047
      WBVar01498959
      WBVar00655048
      WBVar00655049
      WBVar00655050
      WBVar00655051
    Strain: WBStrain00003165
    RNASeq_FPKM (74)
    GO_annotation: 00099996
      00099997
      00099998
      00099999
      00100000
      00111198
    Contained_in_operon: CEOP1472
    Ortholog (40)
    Paralog: WBGene00003821 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00013001 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00016907 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00022054 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable GTP binding activity. Predicted to be located in nucleolus. Is an ortholog of human GNL2 (G protein nucleolar 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T19A6.2a
      T19A6.2b
    Corresponding_CDS_history: T19A6.2a:wp90
      T19A6.2b:wp90
      T19A6.2c:wp274
    Corresponding_transcript: T19A6.2a.1
      T19A6.2b.1
    Other_sequence (84)
    Associated_feature: WBsf984419
      WBsf984420
      WBsf1010227
      WBsf218150
  Experimental_info: RNAi_result: WBRNAi00077299 Inferred_automatically: RNAi_primary
      WBRNAi00026305 Inferred_automatically: RNAi_primary
      WBRNAi00116783 Inferred_automatically: RNAi_primary
      WBRNAi00035644 Inferred_automatically: RNAi_primary
      WBRNAi00004224 Inferred_automatically: RNAi_primary
      WBRNAi00053485 Inferred_automatically: RNAi_primary
      WBRNAi00001175 Inferred_automatically: RNAi_primary
      WBRNAi00077312 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram2000
      Expr6709
      Expr1023236
      Expr1031645
      Expr1157050
      Expr2013993
      Expr2032233
    Drives_construct: WBCnstr00003641
      WBCnstr00036016
    Construct_product: WBCnstr00036016
    Microarray_results (35)
    Expression_cluster: WBPaper00028451:Low_abundance_spermatogenesis_enriched
      WBPaper00029359_1197
      WBPaper00029359_1225
      WBPaper00029359_1291
      WBPaper00029359_1367
      WBPaper00029359_1483
      WBPaper00029359_1494
      WBPaper00029359_1546
      WBPaper00029359_1561
      WBPaper00029359_1692
      WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032031:DConiospora_upregulated_cDNA_24h
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_larva_enriched
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:coelomocytes_larva_enriched
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:hypodermis_larva_enriched
      WBPaper00037950:intestine_embryo_enriched
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_larva_enriched
      WBPaper00040209:B.thuringiensis_downregulated_MY15
      WBPaper00040209:B.thuringiensis_upregulated_MY18
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00042215:wdr-23(tm1817)_upregulated
      WBPaper00044426:rotenone_24h_downregulated
      WBPaper00044501:gld-1_let-7_regulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044743:wdr-23_neuron_upregulated
      WBPaper00045314:S.aureus-induced_hlh-30(tm1978)
      WBPaper00045314:S.aureus-induced_N2
      WBPaper00045521:Gender_Neutral
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
      WBPaper00046858:elt-2(RNAi)_downregulated
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049159:Microwave_upregulated_adult
      WBPaper00049290:rsks-1(sv31)_downregulated
      WBPaper00049368:daf-2(e1370)_upregulated
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050686:glp-1(e2141)_downregulated
      WBPaper00050698:DEP-1_interacting
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:body-wall-muscle_nucleus_expressed
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:epidermis_nucleus_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051245:intestine_nucleus_expressed
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053321:embryo-to-L1_upregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053599:mitosis_vs_meiosis_upregulated
      WBPaper00053599:oocyte_vs_mitosis_upregulated
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00055226:ADR-2_target_N2
      WBPaper00055648:germline_expressed
      WBPaper00055969:electromagnetic-field_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056034:pals-25(jy9)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056826:SGP_biased
      WBPaper00057083:daf-2(e1370)rsks-1(ok1255)_post-transcriptional_downregulated
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00059471:EGL-43_interacting
      WBPaper00059605:MUT-16_interacting
      WBPaper00060278:atp-2(RNAi)_upregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060683:hlh-11(ko1)_upregulated
      WBPaper00061274:hypergravity_15xg_downregulated
      WBPaper00061340:M_cell
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061527:B0511.6_180-Y54E10BR.4_1509
      WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062498:PPM-1.D_interacting
      WBPaper00062520:qui-1(db104)_downregulated
      WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064315:mes-4(bn73)_downregulated_EGCs
      WBPaper00064871:hypoxia_downregulated_F2
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065373:sek-1(km4)_downregulated_cisplatin
      WBPaper00065841:11_0
      WBPaper00065975:P-body_vs_oocyte_depleted
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00005124:progesterone_10-9M_regulated
      WBPaper00024393:strongly_regulated_dauer_genes
      WBPaper00025032:cluster_45
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026980:intestine_enriched
      WBPaper00030985:Photorhabdus_luminescens_downregulated
      WBPaper00030985:Serratia_marcesens_downregulated
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00032062:age_regulated_genes
      WBPaper00032948:StarveUp3
      WBPaper00036429:glp-1(oz112)_upregulated
      WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_regulated_old
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00041207:CE_dauer_up
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00047070:DAF-16-dependent_UV_response
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00057098:SiO2-nanoparticles_upregulated
      [cgc5767]:cluster_16
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(66_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
      [cgc6390]:herm_sex-enriched
    Interaction (260)
  Map_info: Map: I Position: 2.78304 Error: 0.004428
    Positive: Positive_clone: T19A6 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00034327
    WBPaper00038491
    WBPaper00046133
    WBPaper00055090
    WBPaper00064339
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene