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WormBase Tree Display for Gene: WBGene00020562

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Name Class

WBGene00020562SMapS_parentSequenceT19C3
IdentityVersion1
NameSequence_nameT19C3.4
Molecular_nameT19C3.4
T19C3.4.1
CE02055
Other_nameCELE_T19C3.4Accession_evidenceNDBBX284603
Public_nameT19C3.4
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:03WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
AlleleWBVar01254786
WBVar00250991
WBVar01254787
WBVar01254788
WBVar01903279
WBVar01500082
WBVar02030092
WBVar02030093
WBVar01443142
WBVar01443143
WBVar01443144
WBVar01443145
WBVar00030648
WBVar00798241
WBVar00798242
WBVar00798243
WBVar00798244
WBVar00798245
WBVar00798246
WBVar01564158
WBVar00798247
WBVar01498832
WBVar00798248
WBVar00798249
WBVar00798250
WBVar00798251
WBVar00798252
WBVar00798253
WBVar00798254
WBVar00798255
WBVar00258421
WBVar00798256
WBVar00388258
WBVar00388259
WBVar00388260
WBVar00388261
WBVar01499792
WBVar01499793
WBVar00254249
WBVar02117600
WBVar01768918
WBVar00005706
WBVar01768919
WBVar01768920
WBVar00005711
WBVar01768921
WBVar01768922
WBVar01768923
WBVar00297176
WBVar00005716
WBVar01768924
WBVar01768925
WBVar01768926
WBVar01768927
WBVar01768928
WBVar01768929
WBVar01768930
WBVar01768931
WBVar01951118
WBVar01951119
WBVar02069479
WBVar02069480
RNASeq_FPKM (74)
GO_annotation00055874
00055875
00055876
00055877
00055878
00055879
00055880
OrthologWBGene00035579Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00064841Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00163368Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WBGene00124899Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00139665Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00163440Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00054590Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00226103Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g4668Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g12980Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g11177Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g12541Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g22347Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g15119Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g6762Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g10680Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g18551Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g6860Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00364.g9801Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-T19C3.4Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g16640Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_07897.g38244Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_19063Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_011896Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g14139Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g6968Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30327600Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g6784Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00243665Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00283123Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00263216Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00294315Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0261564Drosophila melanogasterFrom_analysisOrthoInspector
Panther
PhylomeDB
FB:FBgn0034907Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Panther
ZFIN:ZDB-GENE-040426-730Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoInspector
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-050706-125Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoInspector
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-051127-47Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-110411-267Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoInspector
PhylomeDB
SonicParanoid
HGNC:17975Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoInspector
PhylomeDB
SonicParanoid
HGNC:25786Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
PhylomeDB
SonicParanoid
HGNC:26176Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:23711Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoInspector
PhylomeDB
SonicParanoid
MGI:88930Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoInspector
PhylomeDB
SonicParanoid
MGI:1098827Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
PhylomeDB
SonicParanoid
MGI:1919799Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2385070Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoInspector
PhylomeDB
SonicParanoid
RGD:1560401Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoInspector
SonicParanoid
RGD:1306561Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1305230Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
PhylomeDB
SonicParanoid
RGD:1586980Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoInspector
PhylomeDB
SonicParanoid
ParalogWBGene00011401Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00012180Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00015518Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00018930Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00022452Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00022127Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable microtubule binding activity. Predicted to be involved in endoplasmic reticulum tubular network organization. Predicted to be located in cytoplasmic microtubule; endoplasmic reticulum membrane; and endoplasmic reticulum tubular network. Human ortholog(s) of this gene implicated in distal hereditary motor neuronopathy type 5B; hereditary spastic paraplegia 31; and hereditary spastic paraplegia 72. Is an ortholog of human REEP1 (receptor accessory protein 1) and REEP4 (receptor accessory protein 4).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelEFO:MONDO:0015363Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:25786)
DOID:0110817Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:17975)
DOID:0111205Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:25786)
DOID:0110782Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:25786)
Molecular_infoCorresponding_CDST19C3.4
Corresponding_transcriptT19C3.4.1
Other_sequence (27)
Associated_featureWBsf717855
WBsf717856
WBsf991105
WBsf1014098
WBsf226114
Experimental_infoRNAi_resultWBRNAi00035656Inferred_automaticallyRNAi_primary
WBRNAi00053507Inferred_automaticallyRNAi_primary
WBRNAi00006621Inferred_automaticallyRNAi_primary
Expr_patternExpr1027058
Expr1038963
Expr1157074
Expr2006247
Expr2024465
Drives_constructWBCnstr00025049
Construct_productWBCnstr00025049
Microarray_results (18)
Expression_clusterWBPaper00032031:DConiospora_downregulated_OligoArray_24h
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00040221:DAF-12_target_ALF4
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00045314:S.aureus-induced_N2
WBPaper00045521:Oogenic
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049495:starvation-refeeding_regulated
WBPaper00049545:cco-1(RNAi)_upregulated
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
WBPaper00050053:muscle_enriched_Day4
WBPaper00050344:ASER-neuron_enriched
WBPaper00050344:PLM-neuron_enriched
WBPaper00050412:cco-1(RNAi)_upregulated_N2
WBPaper00050468:hlh-30-dependent_Cry5B_regulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:pharynx_expressed
WBPaper00051245:cytoplasm_specific
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:pharyngeal-muscle_cytoplasm_expressed
WBPaper00051305:vit-2(ac3)_upregulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053321:PGCs_depleted_NuGen
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053599:mitosis_vs_meiosis_downregulated
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rapamycin_downregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056139:soil-microbiota_upregulated
WBPaper00056161:male_enriched_siRNA
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056619:CEPsh_enriched
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057288:Cold_downregulated_transcript
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058948:PA14_downregulated
WBPaper00059471:EGL-43_interacting
WBPaper00059895:wounding_upregulated
WBPaper00059987:Wounding_upregulated
WBPaper00060661:sensory-neuron_enriched
WBPaper00060871:M.humicola-infection_48h_regulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061340:CEPsh
WBPaper00061340:ILsh_OLLsh_OLQsh
WBPaper00061527:sol-1-jnk-1_18695
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064071:NHR-49_interacting
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064315:mes-4(bn73)_upregulated_EGCs
WBPaper00064716:paraquat_downregulated
WBPaper00064871:hypoxia_downregulated_F2
WBPaper00065086:JU1400_N.ferruginous_regulated
WBPaper00065086:JU1400_N.ironsii_regulated
WBPaper00065158:AFD_depleted
WBPaper00065749:Heat-Shock-With-Recovery_upregulated_N2
WBPaper00066062:xrep-4(lax137)_upregulated
cgc4386_cluster_5_4
cgc4489_group_25
WBPaper00025141:N2_Expressed_Genes
WBPaper00030985:Photorhabdus_luminescens_upregulated
WBPaper00031003:hlh_1_enriched
WBPaper00035227:heat_shock_regulated
WBPaper00035588:alg-1(-)_upregulated
WBPaper00036123:Cadmium_regulated
WBPaper00038231:Cry5B_1.5-fold_upregulated
WBPaper00041002:HQ_3d_2.0mM_Up
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00048989:N2_allantoin_downregulated
WBPaper00048989:N2_rapamycin_downregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
WBPaper00057098:SiO2-nanoparticles_upregulated
InteractionWBInteraction000151374
WBInteraction000264448
WBInteraction000267730
WBInteraction000356250
WBInteraction000385891
WBInteraction000581171
Map_infoPositivePositive_cloneT19C3Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIII-26.5073
ReferenceWBPaper00038491
WBPaper00055090
MethodGene