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WormBase Tree Display for Variation: WBVar00251563

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Name Class

WBVar00251563NamePublic_nametm2718
Other_nameY54E10A.2.1:c.1565+2350_1565+2784del
Y54E10A.16.1:c.636_1023del
CE24445:p.Ile212MetfsTer48
HGVSgCHROMOSOME_I:g.3244834_3245268del
Sequence_detailsSMapS_parentSequenceY54E10A
Flanking_sequencesctgttggccgaatcgctccatgaatgagtcatgaagaatttgttgagcggcattcgggaa
Mapping_targetY54E10A
Source_location7CHROMOSOME_I32448333245269Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm2718_external
tm2718_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq2718
NBP_allele
StatusLive
AffectsGeneWBGene00021834
WBGene00003258
TranscriptY54E10A.2.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54E10A.2.1:c.1565+2350_1565+2784del
Intron_number9/15
Y54E10A.16.1 (11)
IsolationMutagenTMP/UV
GeneticsMapI
DescriptionPhenotypeWBPhenotype:0000154Paper_evidenceWBPaper00036735
Curator_confirmedWBPerson712
WBPhenotype:0000296Paper_evidenceWBPaper00036735
Curator_confirmedWBPerson712
WBPhenotype:0000297Paper_evidenceWBPaper00036735
Curator_confirmedWBPerson712
RemarkAnimals exhibit fusions of rays 4-5 (17%), rays 6-7 (60%) and rays 8-9(31%). Although structural processes were fused, neuronal processes were well separated.Paper_evidenceWBPaper00036735
Curator_confirmedWBPerson712
PenetranceIncompletePaper_evidenceWBPaper00036735
Curator_confirmedWBPerson712
Variation_effectNullPaper_evidenceWBPaper00036735
Curator_confirmedWBPerson712
WBPhenotype:0001005Paper_evidenceWBPaper00036735
Curator_confirmedWBPerson712
RemarkIn response to anterior touch, backward movement of males is uncoordinated.Paper_evidenceWBPaper00036735
Curator_confirmedWBPerson712
WBPhenotype:0001414Paper_evidenceWBPaper00036735
Curator_confirmedWBPerson712
Phenotype_not_observedWBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as homozygous viable by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceFX
WBPhenotype:0000229Paper_evidenceWBPaper00036735
Curator_confirmedWBPerson712
ReferenceWBPaper00036735
Remark85243/85244-85678/85679 (435 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele