WormBase Tree Display for Gene: WBGene00021834
expand all nodes | collapse all nodes | view schema
| WBGene00021834 | SMap | S_parent | Sequence | Y54E10A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | mab-31 | Paper_evidence | WBPaper00036735 | |||||
| Person_evidence | WBPerson261 | ||||||||
| Sequence_name | Y54E10A.16 | ||||||||
| Molecular_name | Y54E10A.16 | ||||||||
| Y54E10A.16.1 | |||||||||
| CE24445 | |||||||||
| Other_name | CELE_Y54E10A.16 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | mab-31 | ||||||||
| DB_info | Database | AceView | gene | 1D812 | |||||
| WormQTL | gene | WBGene00021834 | |||||||
| WormFlux | gene | WBGene00021834 | |||||||
| NDB | locus_tag | CELE_Y54E10A.16 | |||||||
| NCBI | gene | 171898 | |||||||
| RefSeq | protein | NM_058728.8 | |||||||
| SwissProt | UniProtAcc | Q9N3E2 | |||||||
| UniProt_GCRP | UniProtAcc | Q9N3E2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 20 Aug 2010 16:17:43 | WBPerson2970 | Event | Acquires_merge | WBGene00003118 | ||||
| Name_change | CGC_name | mab-31 | |||||||
| Acquires_merge | WBGene00003118 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | mab | ||||||||
| Allele (34) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00093730 | ||||||||
| 00093731 | |||||||||
| 00093732 | |||||||||
| 00093733 | |||||||||
| 00093734 | |||||||||
| 00093735 | |||||||||
| Ortholog (26) | |||||||||
| Structured_description | Concise_description | mab-31 encodes a novel protein that is highly conserved amongst nematodes; mab-31 functions in the TGF-beta signaling pathway to regulate the male tail ray patterning process, specifically the positioning of the R7-derived ray cell cluster; a mab-31::gfp reporter is expressed in a wide variety of tissues, including the intestine, hypodermis, pharynx, and neuronal support cells; in males, mab-31::gfp is also seen in the ray structural cells; a MAB-31::GFP localizes to the nucleus. | Paper_evidence | WBPaper00036735 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 08 Aug 2010 00:00:00 | ||||||||
| Automated_description | Involved in nematode male tail tip morphogenesis and transforming growth factor beta receptor signaling pathway. Located in nucleus. Expressed in hyp7 syncytium; intestine; pharynx; ray; and socket cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y54E10A.16 | |||||||
| Corresponding_CDS_history | Y54E10A.16b:wp232 | ||||||||
| Corresponding_transcript | Y54E10A.16.1 | ||||||||
| Other_sequence (21) | |||||||||
| Associated_feature | WBsf649014 | ||||||||
| WBsf649015 | |||||||||
| WBsf664023 | |||||||||
| WBsf219112 | |||||||||
| WBsf219113 | |||||||||
| WBsf219114 | |||||||||
| WBsf219115 | |||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Expr9099 | ||||||||
| Expr1026519 | |||||||||
| Expr1039580 | |||||||||
| Expr1160781 | |||||||||
| Expr2013326 | |||||||||
| Expr2031558 | |||||||||
| Drives_construct | WBCnstr00007260 | ||||||||
| WBCnstr00007261 | |||||||||
| WBCnstr00007262 | |||||||||
| Construct_product | WBCnstr00007261 | ||||||||
| WBCnstr00007262 | |||||||||
| Microarray_results (29) | |||||||||
| Expression_cluster (143) | |||||||||
| Interaction | WBInteraction000051791 | ||||||||
| WBInteraction000567982 | |||||||||
| WBInteraction000571209 | |||||||||
| WBInteraction000571212 | |||||||||
| WBInteraction000571213 | |||||||||
| Map_info | Map | I | Position | -4.35078 | Error | 0.04403 | |||
| Positive | Positive_clone | Y54E10A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031786 | ||||||||
| WBPaper00036735 | |||||||||
| WBPaper00060096 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
