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WormBase Tree Display for Gene: WBGene00136945

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Name Class

WBGene00136945SMapS_parentSequenceCjap.Contig17636
IdentityVersion3
NameCGC_nameCjp-unc-52From_analysisInferred_from_orthology
Sequence_nameCJA17741
Molecular_nameCJA17741a
CJA17741a.1
JA48430
CJA17741b
JA43283
CJA17741b.1
Public_nameCjp-unc-52
SpeciesCaenorhabditis japonica
HistoryVersion_change129 Aug 2008 14:34:23WBPerson4055EventImportedNGASP import
229 Jul 2011 11:13:38WBPerson4055EventImportedAugustus import
320 Mar 2018 10:26:12WBPerson4025Name_changeCGC_nameCjp-unc-52
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classunc
RNASeq_FPKMWBls:0000004110.149From_analysisRNASeq.japonica.WBls:0000004.control_mean
RNASeq.japonica.WBls:0000004.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:0000027105.938From_analysisRNASeq.japonica.WBls:0000027.control_mean
RNASeq.japonica.WBls:0000027.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:0000038159.927From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
162.98From_analysisRNASeq.japonica.WBls:0000038.control_mean
RNASeq.japonica.WBls:0000038.control_median
166.033From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004117.405From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
22.2418From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
22.8065From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
25.3571From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
26.9642From_analysisRNASeq.japonica.WBls:0000041.control_median
28.5713From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
29.3654From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
33.2336From_analysisRNASeq.japonica.WBls:0000041.control_mean
55.9782From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
64.1432From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
WBls:000010129.3654From_analysisRNASeq.japonica.total_over_all_stages.control_median
62.1474From_analysisRNASeq.japonica.total_over_all_stages.control_mean
OrthologWBGene00006787Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00032251Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00062211Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00099475Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00145079Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00228755Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g12389Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP26.g4151Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g8092Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g20002Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g27330Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g27331Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g4962Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g4963Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g4964Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g8473Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g10522Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g21168Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g12078Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_19196.g26177Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-unc-52Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g20229Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g20230Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g20231Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_03948.g31682Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_22569Caenorhabditis latensFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g12787Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g4559Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20161610Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g6587Caenorhabditis elegansFrom_analysisWormBase-Compara
chrII_pilon.g6588Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00246876Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00267333Strongyloides rattiFrom_analysisWormBase-Compara
Paralog (13)
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Immunoglobulin I-set domain; Immunoglobulin I-set; Immunoglobulin-like domain; Immunoglobulin-like fold; Laminin IV; Laminin-type EGF domain; Immunoglobulin subtype 2; Low-density lipoprotein receptor domain class A; Immunoglobulin domain; Immunoglobulin-like domain superfamily; Laminin EGF domain; Low-density lipoprotein (LDL) receptor class A repeat; Immunoglobulin subtype; Laminin B (Domain IV); and LDL receptor-like superfamily. Is an ortholog of C. elegans unc-52. In C. elegans, unc-52 is involved in several processes, including hemidesmosome assembly; muscle cell cellular homeostasis; and muscle structure development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCJA17741a
CJA17741b
Corresponding_transcriptCJA17741a.1
CJA17741b.1
Other_sequence (169)
Experimental_infoExpr_patternExpr1070428
Expr1072054
Microarray_resultsGPL14145_CJA03850_3927-3986_0.921_2_B
GPL14145_CJA03850_3944-4003_0.923_1_A
GPL14145_CJA03850_3956-4015_0.918_3_C
GPL14145_CJA17741_4016-4075_0.905_2_B
GPL14145_CJA17741_4263-4322_0.901_3_C
GPL14145_CJA17741_4275-4334_0.929_1_A
MethodGene