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WormBase Tree Display for CDS: CJA17741b

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Name Class

CJA17741bSMapS_parentSequenceCjap.Contig17636
StructureSource_exons (24)
DB_infoDB_remarkCJP-UNC-52 protein; contains similarity to Pfam domains PF00052 (Laminin B (Domain IV)), PF00053 (Laminin EGF domain), PF00057 (Low-density lipoprotein receptor domain class A), PF07679 (Immunoglobulin I-set domain), PF13895 (Immunoglobulin domain), PF13927 (Immunoglobulin domain); contains similarity to Interpro domains IPR003598 (Immunoglobulin subtype 2), IPR036055 (LDL receptor-like superfamily), IPR000034 (Laminin IV), IPR013098 (Immunoglobulin I-set), IPR013783 (Immunoglobulin-like fold), IPR002049 (Laminin-type EGF domain), IPR036179 (Immunoglobulin-like domain superfamily), IPR002172 (Low-density lipoprotein (LDL) receptor class A repeat), IPR007110 (Immunoglobulin-like domain), IPR003599 (Immunoglobulin subtype)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Isoform
VisibleGeneWBGene00136945
Corresponding_transcriptCJA17741b.1
Corresponding_proteinJA43283
Corresponding_oligo_setGPL14145_CJA03850_3927-3986_0.921_2_B
GPL14145_CJA03850_3944-4003_0.923_1_A
GPL14145_CJA03850_3956-4015_0.918_3_C
GPL14145_CJA17741_4016-4075_0.905_2_B
GPL14145_CJA17741_4263-4322_0.901_3_C
GPL14145_CJA17741_4275-4334_0.929_1_A
Microarray_resultsGPL14145_CJA03850_3927-3986_0.921_2_B
GPL14145_CJA03850_3944-4003_0.923_1_A
GPL14145_CJA03850_3956-4015_0.918_3_C
GPL14145_CJA17741_4016-4075_0.905_2_B
GPL14145_CJA17741_4263-4322_0.901_3_C
GPL14145_CJA17741_4275-4334_0.929_1_A
RNASeq_FPKMWBls:000000487.8869From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002792.0609From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:0000038119.466From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
120.972From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004114.2061From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
19.4968From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
20.1603From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
21.4061From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
23.6015From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
26.7388From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
37.8759From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
51.1111From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
Remarkbased on Augustus prediction Cjap.Contig17636.g19086.t2[100726 mh6]
Methodcurated