WormBase Tree Display for Gene: WBGene00136945

WBGene00136945 SMap: S_parent: Sequence: Cjap.Contig17636
  Identity: Version: 3
    Name: CGC_name: Cjp-unc-52 From_analysis: Inferred_from_orthology
      Sequence_name: CJA17741
      Molecular_name: CJA17741a
        CJA17741a.1
        JA48430
        CJA17741b
        JA43283
        CJA17741b.1
      Public_name: Cjp-unc-52
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:23 WBPerson4055 Event: Imported: NGASP import
        2 29 Jul 2011 11:13:38 WBPerson4055 Event: Imported: Augustus import
        3 20 Mar 2018 10:26:12 WBPerson4025 Name_change: CGC_name: Cjp-unc-52
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: unc
    RNASeq_FPKM: WBls:0000004 110.149 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 105.938 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 159.927 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
        162.98 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        166.033 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
      WBls:0000041 17.405 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        22.2418 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        22.8065 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        25.3571 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        26.9642 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        28.5713 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        29.3654 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        33.2336 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        55.9782 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        64.1432 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
      WBls:0000101 29.3654 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
        62.1474 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
    Ortholog (33)
    Paralog (13)
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Immunoglobulin I-set domain; Immunoglobulin I-set; Immunoglobulin-like domain; Immunoglobulin-like fold; Laminin IV; Laminin-type EGF domain; Immunoglobulin subtype 2; Low-density lipoprotein receptor domain class A; Immunoglobulin domain; Immunoglobulin-like domain superfamily; Laminin EGF domain; Low-density lipoprotein (LDL) receptor class A repeat; Immunoglobulin subtype; Laminin B (Domain IV); and LDL receptor-like superfamily. Is an ortholog of C. elegans unc-52. In C. elegans, unc-52 is involved in several processes, including hemidesmosome assembly; muscle cell cellular homeostasis; and muscle structure development. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA17741a
      CJA17741b
    Corresponding_transcript: CJA17741a.1
      CJA17741b.1
    Other_sequence (169)
  Experimental_info: Expr_pattern: Expr1070428
      Expr1072054
    Microarray_results: GPL14145_CJA03850_3927-3986_0.921_2_B
      GPL14145_CJA03850_3944-4003_0.923_1_A
      GPL14145_CJA03850_3956-4015_0.918_3_C
      GPL14145_CJA17741_4016-4075_0.905_2_B
      GPL14145_CJA17741_4263-4322_0.901_3_C
      GPL14145_CJA17741_4275-4334_0.929_1_A
  Method: Gene