WormBase Tree Display for Gene: WBGene00107390
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| WBGene00107390 | SMap | S_parent | Sequence | PPA_ChrIII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 8 | |||||||
| Name | CGC_name | Ppa-nca-2 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA17836 | ||||||||
| Molecular_name | PPA17836 | ||||||||
| PPA17836.1 | |||||||||
| PP60264 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000074539 | ||||||||
| GENEPREDICTION_SNAP300000074540 | |||||||||
| UMM-S2874-1.13 | Person_evidence | WBPerson606 | |||||||
| Ppa-nca-1 | Inferred_automatically | from gene merge | |||||||
| Public_name | Ppa-nca-2 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:05 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 17 Nov 2017 15:19:42 | WBPerson4055 | Name_change | CGC_name | Ppa-nca-1 | ||||
| 3 | 24 Nov 2017 09:46:50 | WBPerson4055 | Event | Acquires_merge | WBGene00107391 | ||||
| 4 | 20 Mar 2018 10:26:11 | WBPerson4025 | Name_change | CGC_name | Ppa-nca-2 | ||||
| Other_name | Ppa-nca-1 | ||||||||
| 5 | 08 Feb 2019 15:42:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 08 May 2019 10:09:25 | WBPerson1983 | Name_change | CGC_name | Ppa-nca-2 | ||||
| 7 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 8 | 28 Jul 2021 11:12:28 | WBPerson1983 | Name_change | CGC_name | Ppa-nca-2 | ||||
| Acquires_merge | WBGene00107391 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nca | ||||||||
| RNASeq_FPKM | WBls:0000032 | 7.20328 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 2.40109 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| GO_annotation | 00181262 | ||||||||
| 00181263 | |||||||||
| 00181264 | |||||||||
| 00181265 | |||||||||
| 00181266 | |||||||||
| Ortholog (43) | |||||||||
| Paralog | WBGene00091694 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| WBGene00092845 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00116989 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00118298 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable monoatomic cation channel activity. Predicted to be involved in monoatomic ion transport and transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans nca-2. In C. elegans, nca-2 is involved in positive regulation of GABAergic synaptic transmission; positive regulation of cholinergic synaptic transmission; and positive regulation of locomotion. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA17836 | |||||||
| Corresponding_transcript | PPA17836.1 | ||||||||
| Other_sequence (26) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_21202 | |||||||
| GPL14372_Probes_21203 | |||||||||
| GPL14372_Probes_21204 | |||||||||
| GPL14372_Probes_21205 | |||||||||
| GPL14372_Probes_21206 | |||||||||
| GPL14372_Probes_73259 | |||||||||
| GPL14372_Probes_73260 | |||||||||
| GPL14372_Probes_73261 | |||||||||
| GPL14372_Probes_73262 | |||||||||
| GPL14372_Probes_73263 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_up | ||||||||
| Remark | [190208 pad] The CGC name Ppa-nca-2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-nca-2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
