WormBase Tree Display for Gene: WBGene00044079
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| WBGene00044079 | Evidence | Inferred_automatically | Gene name parsed from strain object: VC804 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_X | ||||||
| Identity | Version | 3 | |||||||
| Name | CGC_name | tag-241 | Person_evidence | WBPerson201 | |||||
| Sequence_name | C34E11.3 | ||||||||
| Molecular_name (22) | |||||||||
| Other_name | CELE_C34E11.3 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | tag-241 | ||||||||
| DB_info | Database | AceView | gene | XM453 | |||||
| WormQTL | gene | WBGene00044079 | |||||||
| WormFlux | gene | WBGene00044079 | |||||||
| NDB | locus_tag | CELE_C34E11.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00044079|UniProtKB=A0A3P6PCW4 | |||||||
| family | PTHR15742 | ||||||||
| NCBI | gene | 181360 | |||||||
| RefSeq | protein | NM_001381110.1 | |||||||
| NM_001270245.2 | |||||||||
| NM_001368529.3 | |||||||||
| NM_001368528.3 | |||||||||
| NM_001368527.5 | |||||||||
| NM_001392853.1 | |||||||||
| NM_001392852.1 | |||||||||
| TREEFAM | TREEFAM_ID | TF321343 | |||||||
| TrEMBL | UniProtAcc | A0A3P6PCW4 | |||||||
| G5EGR4 | |||||||||
| D3KFT0 | |||||||||
| A0A3P6N684 | |||||||||
| A0A3P6NIF2 | |||||||||
| G5ED16 | |||||||||
| D3KFS9 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A3P6PCW4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 22 Dec 2004 16:59:41 | WBPerson2970 | Event | Created | |||
| 2 | 05 Oct 2005 17:16:53 | WBPerson2970 | Event | Acquires_merge | WBGene00007936 | ||||
| Name_change | Sequence_name | C34E11.3 | |||||||
| 3 | 20 May 2019 15:21:47 | WBPerson4025 | Event | Acquires_merge | WBGene00138725 | ||||
| Acquires_merge | WBGene00007936 | ||||||||
| WBGene00138725 | |||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tag | ||||||||
| Allele (157) | |||||||||
| Strain | WBStrain00002463 | ||||||||
| WBStrain00036083 | |||||||||
| WBStrain00037745 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (43) | |||||||||
| Paralog | WBGene00001086 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00001860 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00003367 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00004873 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00004874 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00010306 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00012198 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00016172 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00019087 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in several structures, including body wall muscle cell; head mesodermal cell; intestinal muscle; neurons; and rectal muscle based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; RNA-seq; and proteomic studies. Is affected by seventeen chemicals including rotenone; multi-walled carbon nanotube; and D-glucose based on RNA-seq and microarray studies. Human MTCL1 enables microtubule binding activity. Is an ortholog of human MTCL1 (microtubule crosslinking factor 1) and MTCL2 (microtubule crosslinking factor 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C34E11.3a | |||||||
| C34E11.3b | |||||||||
| C34E11.3c | |||||||||
| C34E11.3d | |||||||||
| C34E11.3e | |||||||||
| C34E11.3f | |||||||||
| C34E11.3g | |||||||||
| Corresponding_CDS_history | C34E11.3:wp196 | ||||||||
| C34E11.3:wp211 | |||||||||
| Corresponding_transcript | C34E11.3a.1 | ||||||||
| C34E11.3b.1 | |||||||||
| C34E11.3c.1 | |||||||||
| C34E11.3c.2 | |||||||||
| C34E11.3d.1 | |||||||||
| C34E11.3e.1 | |||||||||
| C34E11.3f.1 | |||||||||
| C34E11.3g.1 | |||||||||
| Other_sequence (23) | |||||||||
| Associated_feature | WBsf663387 | ||||||||
| WBsf718711 | |||||||||
| WBsf1007125 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00011610 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00015658 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113016 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113246 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041901 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (11) | |||||||||
| Drives_construct | WBCnstr00003060 | ||||||||
| WBCnstr00023775 | |||||||||
| Construct_product | WBCnstr00023775 | ||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (204) | |||||||||
| Interaction | WBInteraction000032291 | ||||||||
| WBInteraction000259453 | |||||||||
| WBInteraction000334623 | |||||||||
| WBInteraction000449160 | |||||||||
| WBInteraction000515982 | |||||||||
| WBInteraction000578599 | |||||||||
| WBInteraction000585528 | |||||||||
| Map_info | Map | X | Position | 6.73486 | Error | 0.001089 | |||
| Positive | Positive_clone | C34E11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5553 | |||||||
| 4875 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00055090 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
