WormBase Tree Display for Gene: WBGene00004874
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| WBGene00004874 | SMap | S_parent | Sequence | F35G12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | smc-4 | Person_evidence | WBPerson203 | |||||
| Sequence_name | F35G12.8 | ||||||||
| Molecular_name | F35G12.8 | ||||||||
| F35G12.8.1 | |||||||||
| CE03287 | |||||||||
| Other_name | CELE_F35G12.8 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | smc-4 | ||||||||
| DB_info | Database | AceView | gene | 3F681 | |||||
| WormQTL | gene | WBGene00004874 | |||||||
| WormFlux | gene | WBGene00004874 | |||||||
| NDB | locus_tag | CELE_F35G12.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004874|UniProtKB=Q20060 | |||||||
| family | PTHR43939 | ||||||||
| NCBI | gene | 175603 | |||||||
| RefSeq | protein | NM_065534.8 | |||||||
| SwissProt | UniProtAcc | Q20060 | |||||||
| TREEFAM | TREEFAM_ID | TF101158 | |||||||
| UniProt_GCRP | UniProtAcc | Q20060 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | smc | ||||||||
| Allele (39) | |||||||||
| Strain | WBStrain00002271 | ||||||||
| WBStrain00002159 | |||||||||
| WBStrain00023523 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (22) | |||||||||
| Contained_in_operon | CEOP3200 | ||||||||
| Ortholog (41) | |||||||||
| Paralog | WBGene00001086 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001830 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00001860 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00003367 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00004873 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00010306 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00012198 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00016172 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00019087 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00044079 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | The smc-4 gene encodes a homolog of the SMC4 subunit of mitotic condensin; SMC-4 acts with MIX-1 to enable chromosome segregation. | Paper_evidence | WBPaper00005173 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable ATP binding activity and ATP hydrolysis activity. Involved in mitotic sister chromatid segregation and positive regulation of nematode male tail tip morphogenesis. Located in chromosome, centromeric region and condensed chromosome. Expressed in head; linker cell; and tail. Is an ortholog of human SMC4 (structural maintenance of chromosomes 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F35G12.8 | |||||||
| Corresponding_transcript | F35G12.8.1 | ||||||||
| Other_sequence (30) | |||||||||
| Associated_feature | WBsf645103 | ||||||||
| WBsf658848 | |||||||||
| WBsf224763 | |||||||||
| Experimental_info | RNAi_result (28) | ||||||||
| Expr_pattern | Chronogram1819 | ||||||||
| Expr1858 | |||||||||
| Expr5960 | |||||||||
| Expr5961 | |||||||||
| Expr11148 | |||||||||
| Expr1012412 | |||||||||
| Expr1032415 | |||||||||
| Expr1150273 | |||||||||
| Expr2015899 | |||||||||
| Expr2034132 | |||||||||
| Drives_construct | WBCnstr00002919 | ||||||||
| WBCnstr00004457 | |||||||||
| WBCnstr00018186 | |||||||||
| WBCnstr00035348 | |||||||||
| Construct_product | WBCnstr00035348 | ||||||||
| Antibody | WBAntibody00000481 | ||||||||
| WBAntibody00000482 | |||||||||
| WBAntibody00000483 | |||||||||
| WBAntibody00000484 | |||||||||
| WBAntibody00002019 | |||||||||
| WBAntibody00002959 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (164) | |||||||||
| Interaction (214) | |||||||||
| WBProcess | WBbiopr:00000099 | ||||||||
| Map_info | Map | III | Position | -3.04733 | Error | 0.007437 | |||
| Positive | Positive_clone | F35G12 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 5151 | |||||||
| 4157 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (21) | |||||||||
| Remark | Sequence connection from [Glotzer M] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
