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WormBase Tree Display for Gene: WBGene00021715

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Name Class

WBGene00021715SMapS_parentSequenceY49F6B
IdentityVersion1
NameSequence_nameY49F6B.2
Molecular_nameY49F6B.2
Y49F6B.2.1
CE25336
Other_nameCELE_Y49F6B.2Accession_evidenceNDBBX284602
Public_nameY49F6B.2
DB_infoDatabaseAceViewgene2D793
WormQTLgeneWBGene00021715
WormFluxgeneWBGene00021715
NDBlocus_tagCELE_Y49F6B.2
PanthergeneCAEEL|WormBase=WBGene00021715|UniProtKB=Q9N4U1
familyPTHR21686
NCBIgene173696
RefSeqproteinNM_062162.8
TREEFAMTREEFAM_IDTF352664
TrEMBLUniProtAccQ9N4U1
UniProt_GCRPUniProtAccQ9N4U1
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:04WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (69)
RNASeq_FPKM (74)
GO_annotation00094905
00094906
00094907
00094908
Contained_in_operonCEOP2108
Ortholog (35)
Structured_descriptionAutomated_descriptionPredicted to be involved in RNA processing. Predicted to be located in nucleolus. Is an ortholog of human DNTTIP2 (deoxynucleotidyltransferase terminal interacting protein 2).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY49F6B.2
Corresponding_transcriptY49F6B.2.1
Other_sequence (32)
Associated_featureWBsf644070
WBsf987268
WBsf221020
Experimental_infoRNAi_resultWBRNAi00094459Inferred_automaticallyRNAi_primary
WBRNAi00094258Inferred_automaticallyRNAi_primary
WBRNAi00094094Inferred_automaticallyRNAi_primary
WBRNAi00094343Inferred_automaticallyRNAi_primary
WBRNAi00026791Inferred_automaticallyRNAi_primary
WBRNAi00071125Inferred_automaticallyRNAi_primary
WBRNAi00071773Inferred_automaticallyRNAi_primary
WBRNAi00057037Inferred_automaticallyRNAi_primary
WBRNAi00009364Inferred_automaticallyRNAi_primary
Expr_patternExpr1017540
Expr1039512
Expr1160481
Expr2007721
Expr2025963
Microarray_results (19)
Expression_clusterWBPaper00028451:Low_abundance_spermatogenesis_enriched
WBPaper00031040:TGF-beta_adult_downregulated
WBPaper00037682:sma-2_downregulated
WBPaper00037950:AVA-neuron_embryo_enriched
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:bodywall-muscle_larva_enriched
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:hypodermis_larva_enriched
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00040560:hpl-2_embryo_downregulated
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045521:Gender_Neutral
WBPaper00045774:clk-1_downregulated
WBPaper00046499:AMPK_regulated
WBPaper00048923:Aging_regulated
WBPaper00048988:daf-2(e1370)_daf-16(mu86)_downregulated_neuron
WBPaper00048988:neuron_expressed
WBPaper00049545:cco-1(RNAi)_downregulated
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:intestine_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:body-wall-muscle_nucleus_expressed
WBPaper00051245:epidermis_nucleus_expressed
WBPaper00051245:intestine_nucleus_expressed
WBPaper00051245:nucleus_specific
WBPaper00053289:DREAM-target
WBPaper00053302:stavudine_24h_regulated
WBPaper00053321:embryo-to-L1_downregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
WBPaper00053388:dauer_regulated_Cluster6
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00053810:isp-1(qm150)_downregulated
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055482:pmt-2(RNAi)_downregulated
WBPaper00055648:germline_expressed
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_downregulated_N2
WBPaper00056284:ints-5(RNAi)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00056826:SGP_biased
WBPaper00057068:ints-4(RNAi)_upregulated_Cadmium
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058691:cfp-1(tm6369)_downregulated
WBPaper00058691:set-2(bn129)_downregulated
WBPaper00058691:sin-3(tm1276)_downregulated
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059471:EGL-43_interacting
WBPaper00060014:set-2(tm1630)_upregulated
WBPaper00060100:SiNP_downregulated_mRNA
WBPaper00061274:hypergravity_15xg_downregulated
WBPaper00061340:B
WBPaper00061341:28C_24h_downregulated
WBPaper00061341:28C_48h_downregulated
WBPaper00061527:B0491.7-Y54E10A.10
WBPaper00062056:lin-15B(n744)_upregulated
WBPaper00062056:lin-37(n758)_upregulated
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062498:PPM-1.D_interacting
WBPaper00062554:MAGU-2_interacting
WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064315:mes-3(bn199)_downregulated_PGCs
WBPaper00064315:mrg-1(qa6200)_downregulated_PGCs
WBPaper00064716:paraquat_upregulated
WBPaper00064735:mys-1(RNAi)_vs_N2_upregulated
WBPaper00065841:57_0
WBPaper00065945:epidermis-rpoa-2(-)_upregulated_transcript
WBPaper00065945:global-rpoa-2(-)_upregulated_transcript
WBPaper00065975:P-body_vs_oocyte_depleted
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065993:glp-1(e2141)_downregulated
cgc4489_group_7
WBPaper00024393:strongly_regulated_dauer_genes
WBPaper00025032:cluster_2
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00031832:slr-2_regulated
WBPaper00032165:differentially_expressed_with_age_medoid_7
WBPaper00032948:FedUp
WBPaper00034739:N2moreDR1350
WBPaper00036286:Pattern_H
WBPaper00037695:LD_3-day
WBPaper00038231:Cry5B_1.5-fold_downregulated
WBPaper00038231:Cry5B_2-fold_downregulated
WBPaper00040210:Chlorpyrifos_24C_regulated
WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
WBPaper00041002:HF_3d_2.0mM_Down
WBPaper00041174:genotypic
WBPaper00041174:genotypic_prime
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:control_vs_UVC-exposed_51h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_3h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
WBPaper00045263:isp-1(qm150)_downregulated
WBPaper00047070:DAF-16-dependent_UV_response
WBPaper00047070:N2_UV_upregulated
WBPaper00047070:xpa-1_UV_upregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(122_min)
[cgc5767]:expression_class_SE
[cgc5767]:expression_class_SE_pi(122_min)
[cgc6390]:intrinsic
Interaction (45)
Map_infoPositivePositive_cloneY49F6BInferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionII-6.25003
ReferenceWBPaper00038491
WBPaper00055090
WBPaper00064898
MethodGene