WormBase Tree Display for Gene: WBGene00021645
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| WBGene00021645 | SMap | S_parent | Sequence | Y47G6A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | Y47G6A.19 | |||||||
| Molecular_name (13) | |||||||||
| Other_name | CELE_Y47G6A.19 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | Y47G6A.19 | ||||||||
| DB_info | Database | AceView | gene | 1E92 | |||||
| WormQTL | gene | WBGene00021645 | |||||||
| WormFlux | gene | WBGene00021645 | |||||||
| NDB | locus_tag | CELE_Y47G6A.19 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021645|UniProtKB=H2L0D7 | |||||||
| family | PTHR11705 | ||||||||
| NCBI | gene | 171921 | |||||||
| RefSeq | protein | NM_001373809.3 | |||||||
| NM_001129067.5 | |||||||||
| NM_001026591.6 | |||||||||
| NM_001404266.1 | |||||||||
| TrEMBL | UniProtAcc | Q6AW09 | |||||||
| H2L0D8 | |||||||||
| H2L0D7 | |||||||||
| A0A7R9SW65 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A7R9SW65 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (136) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00023013 | ||||||||
| 00023014 | |||||||||
| 00023015 | |||||||||
| 00023016 | |||||||||
| 00023017 | |||||||||
| 00023018 | |||||||||
| 00125927 | |||||||||
| 00125928 | |||||||||
| 00125929 | |||||||||
| Ortholog (26) | |||||||||
| Paralog | WBGene00008521 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00011235 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00012168 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00013895 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00020281 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00020283 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00021213 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00021984 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004747 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | Y47G6A.19 encodes, by alternative splicing, two isoforms of a putativemetallocarboxypeptidase orthologous to human carboxypeptidase A and Bprecursors (CPA1-6 and CPB1-2); the larger Y47G6A.19 isoform contains aC-terminal metridin-like ShK toxin domain absent from the smaller one;Y47G6A.19 and its human orthologs, along with other proteins, comprisean M14A peptidase family; Y47G6A.19 is downregulated 2.5-fold indaf-2(c) dauer larvae; however, Y47G6A.19 has no obvious function innondauer animals, since Y47G6A.19(RNAi) hermaphrodites are superficiallynormal. | Paper_evidence | WBPaper00013412 | |||||
| WBPaper00024393 | |||||||||
| WBPaper00029056 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 22 May 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable metallocarboxypeptidase activity and zinc ion binding activity. Predicted to be involved in proteolysis. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y47G6A.19a | |||||||
| Y47G6A.19b | |||||||||
| Y47G6A.19c | |||||||||
| Y47G6A.19d | |||||||||
| Corresponding_CDS_history | Y47G6A.19:wp127 | ||||||||
| Y47G6A.19a:wp238 | |||||||||
| Y47G6A.19b:wp238 | |||||||||
| Corresponding_transcript | Y47G6A.19a.1 | ||||||||
| Y47G6A.19a.2 | |||||||||
| Y47G6A.19b.1 | |||||||||
| Y47G6A.19c.1 | |||||||||
| Y47G6A.19d.1 | |||||||||
| Other_sequence (22) | |||||||||
| Associated_feature (13) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00037186 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00089198 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004631 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062986 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00070012 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056809 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004630 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00070049 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1013167 | ||||||||
| Expr1160262 | |||||||||
| Expr2007625 | |||||||||
| Expr2025863 | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (188) | |||||||||
| Interaction | WBInteraction000007789 | ||||||||
| WBInteraction000123330 | |||||||||
| WBInteraction000123901 | |||||||||
| WBInteraction000123904 | |||||||||
| WBInteraction000123927 | |||||||||
| WBInteraction000123932 | |||||||||
| Map_info | Positive | Positive_clone | Y47G6A | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | I | -3.19444 | |||||||
| Reference | WBPaper00029211 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00055848 | |||||||||
| Method | Gene |
